CK934147

Overview
NameCK934147
Unique NameCK934147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934147_ssr98 microsatellite CK934147_ssr98:98..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1661 contig Csv1_Contig1661:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_CHICK (Cell division control protein 42 homolog OS=Gallus gallus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.352e-44
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PIT    E+L + + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_CANFA (Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.352e-44
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PIT    E+L + + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_BOVIN (Cell division control protein 42 homolog OS=Bos taurus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.352e-44
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PIT    E+L + + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.352e-44
Identity = 83/153 (54.25%), Postives = 113/153 (73.86%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD++     +      PIT   GE+L K + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.684e-44
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PIT   GE+L K + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 5.684e-44
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PIT   GE+L K + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 7.423e-44
Identity = 81/153 (52.94%), Postives = 115/153 (75.16%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD +    ++     PI    G++L K IG+  Y+E
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 162
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.423e-44
Identity = 83/153 (54.25%), Postives = 112/153 (73.20%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+      +      PIT   GE+L K + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVE 156
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.695e-44
Identity = 80/153 (52.29%), Postives = 115/153 (75.16%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD +    ++     P+    G++L K IG+  Y+E
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVE 162
[Close]
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 9.695e-44
Identity = 80/153 (52.29%), Postives = 115/153 (75.16%), Query Frame = 3 
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD +    ++     P+    G++L K IG+  Y+E
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVE 162
The following BLAST results are available for this feature:
BLAST of CK934147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC42_CHICK4.352e-4454.25Cell division control protein 42 homolog OS=Gallus... [more]
CDC42_CANFA4.352e-4454.25Cell division control protein 42 homolog OS=Canis ... [more]
CDC42_BOVIN4.352e-4454.25Cell division control protein 42 homolog OS=Bos ta... [more]
CDC42_AEDAE4.352e-4454.25Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
CDC42_DROME5.684e-4454.25Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_ANOGA5.684e-4454.25Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]
RHOQ_HUMAN7.423e-4452.94Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
CDC42_DROPS7.423e-4454.25Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]
RHOQ_RAT9.695e-4452.29Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE9.695e-4452.29Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934147 ID=CK934147; Name=CK934147; organism=Citrus sinensis; type=EST; length=814bp
GGGGAACCGCAAAGCGATTTCTTTCCCCTTCTCTTTCCTCTCTCATTGGC
CATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCGCTGCTC
TCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTACC
TTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCCGT
TGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTGTG
GCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTCGG
AATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGTCG
AGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACTTG
CATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCCAA
CTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGGTC
AACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTGAG
ACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACTGA
TTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAACTG
AGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTAGA
TCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACCAA
TTACTACAGCTCANGGAGAGGAACTGAGGAAGCTGATTGGATCTCNNNCA
TACATCGAANNNAG
back to top