CK934147

Overview
NameCK934147
Unique NameCK934147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934147_ssr98 microsatellite CK934147_ssr98:98..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1661 contig Csv1_Contig1661:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RACD_ENTHI (Rho-related protein racD (Fragment) OS=Entamoeba histolytica GN=RACD PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.654e-43
Identity = 82/156 (52.56%), Postives = 111/156 (71.15%), Query Frame = 3
Query:  348 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            ++ +K V VGDG+VGKTC+LI YT+N FP DYVPTVFDN+ A + VDG  +NLGLWDTAGQED  +LRPLSY   D+F+L FS+IS+ S+ N++ KW+PE++HY P   +++VGT  D R+D+     +      PITT  GE+L K I +  Y+E
Sbjct:    6 AKSVKLVVVGDGSVGKTCLLICYTTNEFPKDYVPTVFDNYMAPMTVDGEPINLGLWDTAGQEDSEQLRPLSYPNTDLFLLCFSVISRTSFNNISSKWLPEIKHYEPKCKMMVVGTNTDCRNDEAMIRKLADENQKPITTEEGEKLAKDIKAICYME 161          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.654e-43
Identity = 82/153 (53.59%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVF+N++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVF++ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD      +      PIT    E+L + + +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.684e-43
Identity = 85/153 (55.56%), Postives = 106/153 (69.28%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IK V VGDGAVGKTC+LI YT+N FP DY+PTVFDN+  ++      + L LWDTAGQE+Y++LRPLSY  A +F++ FS+ S  SY+NV  KW PE+ H+AP VPIILVGTKLD R+D      +   G   I TA GEEL+  I +  YIE
Sbjct:    8 IKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTVFDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIE 160          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.811e-43
Identity = 82/147 (55.78%), Postives = 107/147 (72.79%), Query Frame = 3
Query:  375 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            G G VGKTC+L+SYT+N FPT+YVPTVFDN+SA V+VD   +NLGLWDTAGQEDY+R+RPLSY   DVF+L FS++S  S+EN++ KW PE+ H+ P  P +L+GTK+D+RD++            PIT+  GE   K IG+  YIE
Sbjct:    1 GAGGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFENISSKWKPEVSHHCPNAPCLLIGTKIDIRDEQTQTNKTCDKKIEPITSEQGEAKCKDIGALKYIE 147          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.400e-42
Identity = 81/156 (51.92%), Postives = 113/156 (72.44%), Query Frame = 3
Query:  348 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            +R +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PEL+   P VP +L+GT++DLRDD +    + +    P+T   G +L K IG+  Y+E
Sbjct:   19 NRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLE 174          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.073e-42
Identity = 80/155 (51.61%), Postives = 112/155 (72.26%), Query Frame = 3
Query:  351 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            + +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVF++ FS+++ ASY NV ++W+PEL+   P VP +L+GT++DLRDD +    + +    P+T   G +L K IG+  Y+E
Sbjct:   20 KMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLE 174          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.448e-41
Identity = 86/152 (56.58%), Postives = 108/152 (71.05%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IK + VGD +VGKTC+LISYT+N+FP +YVPTVFDN++AN +V+ + +NLGLWDTAG E+YN  RPLSY G DVFI+ FSLIS+ S+ENV KKW PE+      V PIILVGTKLDLR   +          +T   GE++R  IG+  Y E
Sbjct:    5 IKVMVVGDMSVGKTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAGSEEYNSFRPLSYPGTDVFIICFSLISQTSFENVIKKWHPEIIQNMEQVPPIILVGTKLDLRGKGK-----SEEKEVTPEMGEQMRAAIGAYKYSE 151          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.448e-41
Identity = 80/153 (52.29%), Postives = 107/153 (69.93%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            IKCV VGDGAVGKTC+L+SYT+N FP +Y+ TVFD +S NV+VDG  +NL LWDTAGQ+DY++ R LS+   DVF++ F+L + AS+ENV  KW PE+ H+ P  PIILVGTK DLR+D+     +      P++   G  + K I +  Y+E
Sbjct:    4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTIERLRERRLQPVSHTQGYVMAKEIKAVKYLE 156          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RACE_DICDI (Rho-related protein racE OS=Dictyostelium discoideum GN=racE PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.682e-41
Identity = 83/158 (52.53%), Postives = 106/158 (67.09%), Query Frame = 3
Query:  336 QMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            Q S +  +K V VGDGAVGKTC+LI Y  N FP DYVPTVF+N++A        + + LWDTAGQE+Y+RLRPLSY GADV +L FS IS++SYE +  KW PE+ HY P VP ILVGTK+DLR+ +    +     PIT   G  ++K I +  Y+E
Sbjct:    5 QGSGATRVKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFEPITADMGISMQKQIKAKKYLE 162          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOL_DROME (Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.235e-40
Identity = 81/155 (52.26%), Postives = 107/155 (69.03%), Query Frame = 3
Query:  351 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR--DDKQFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            R +K   VGDG VGKTCMLI+YT N FP +Y+PTVFDN + N+ VD    NL LWDTAGQEDY RLRPLSY   + F+L +S+ S+ S+ENV  KW PE+RH++  VP++LVGTKLDLR  + ++F         +TT  G+++RK I +   +E
Sbjct:   10 RPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKF---------VTTQEGKKMRKEIHAFNLVE 155          
The following BLAST results are available for this feature:
BLAST of CK934147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACD_ENTHI1.654e-4352.56Rho-related protein racD (Fragment) OS=Entamoeba h... [more]
CDC42_MACFA1.654e-4353.59Cell division control protein 42 homolog OS=Macaca... [more]
RACC_ENTHI3.684e-4355.56Rho-related protein racC OS=Entamoeba histolytica ... [more]
RACB_ENTHI4.811e-4355.78Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RHOJ_MOUSE1.400e-4251.92Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]
RHOJ_HUMAN4.073e-4251.61Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RACH_DICDI3.448e-4156.58Rho-related protein racH OS=Dictyostelium discoide... [more]
RAC2_CAEEL3.448e-4152.29Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RACE_DICDI7.682e-4152.53Rho-related protein racE OS=Dictyostelium discoide... [more]
RHOL_DROME2.235e-4052.26Ras-like GTP-binding protein RhoL OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934147 ID=CK934147; Name=CK934147; organism=Citrus sinensis; type=EST; length=814bp
GGGGAACCGCAAAGCGATTTCTTTCCCCTTCTCTTTCCTCTCTCATTGGC
CATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCGCTGCTC
TCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTACC
TTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCCGT
TGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTGTG
GCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTCGG
AATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGTCG
AGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACTTG
CATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCCAA
CTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGGTC
AACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTGAG
ACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACTGA
TTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAACTG
AGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTAGA
TCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACCAA
TTACTACAGCTCANGGAGAGGAACTGAGGAAGCTGATTGGATCTCNNNCA
TACATCGAANNNAG
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