CK934147

Overview
NameCK934147
Unique NameCK934147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934147_ssr98 microsatellite CK934147_ssr98:98..121. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1661 contig Csv1_Contig1661:1..814. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOU_MOUSE (Rho-related GTP-binding protein RhoU OS=Mus musculus GN=Rhou PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.471e-39
Identity = 72/127 (56.69%), Postives = 99/127 (77.95%), Query Frame = 3
Query:  351 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 731
            R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y   D+F+L FS++S  S++NV +KW+PE+R + P  PIILVGT+ DLR+D +  I+
Sbjct:   51 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPTSFQNVGEKWVPEIRRHCPKAPIILVGTQSDLREDVKVLIE 177          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOA_EMENI (GTP-binding protein rhoA OS=Emericella nidulans GN=rhoA PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.471e-39
Identity = 81/152 (53.29%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  360 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  + V ++ F++ S  S +NV +KWI E+ H+  G+PIILVG K DLR D +    ++     P+T   GEE+RK IG+  Y+E
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCQGLPIILVGCKKDLRHDPKTIEELNKTSQKPVTPEQGEEVRKKIGAYKYLE 158          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOU_HUMAN (Rho-related GTP-binding protein RhoU OS=Homo sapiens GN=RHOU PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.227e-39
Identity = 72/127 (56.69%), Postives = 101/127 (79.53%), Query Frame = 3
Query:  351 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 731
            R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y   D+F+L FS++S +S++NV++KW+PE+R + P  PIILVGT+ DLR+D +  I+
Sbjct:   48 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIE 174          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHO1_CANAL (GTP-binding protein RHO1 OS=Candida albicans GN=RHO1 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.215e-39
Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 3
Query:  360 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V ++ FS+ S  S +NV +KWI E+ H+  GVPIILVG K DLRDD      +      P++T+ G+++ + IG+  Y+E
Sbjct:   11 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRKVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDSPDSLDNVLEKWISEVLHFCQGVPIILVGCKSDLRDDPHTIEALRQQQQQPVSTSEGQQVAQRIGAADYLE 162          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOU_BOVIN (Rho-related GTP-binding protein RhoU OS=Bos taurus GN=RHOU PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 5.505e-39
Identity = 71/125 (56.80%), Postives = 100/125 (80.00%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFID 731
            +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y  AD+F+L FS++  +S++NV++KW+PE+R + P  PIILVGT+ DLR+D +  I+
Sbjct:   47 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVGPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIE 171          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.390e-39
Identity = 79/152 (51.97%), Postives = 101/152 (66.45%), Query Frame = 3
Query:  360 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE+RH+ P VPIILVG K DLR D Q    +      P+    G  + + IG+  Y+E
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLE 158          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RACD_DICDI (Rho-related protein racD OS=Dictyostelium discoideum GN=racD PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 2.092e-38
Identity = 79/153 (51.63%), Postives = 101/153 (66.01%), Query Frame = 3
Query:  357 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            +K V VGDGAVGKT +LI YT+  FP DYVPTVFDNF+   + D   VNL LWDTAGQEDY+ LRPLSY   DVFI+ +S++ + S +N+  KW+PE+     G PIILVGTK DLR+DK+    +      P++   G  L K IG+  + E
Sbjct:    9 VKVVVVGDGAVGKTSLLILYTTKAFPKDYVPTVFDNFNCLEMYDNKPVNLVLWDTAGQEDYDNLRPLSYPQTDVFIICYSVVKRDSLDNIKYKWLPEINQTNQGTPIILVGTKTDLREDKKTLSQLQESKQEPVSRDEGVALAKEIGAVQFFE 161          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.732e-38
Identity = 80/152 (52.63%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  360 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            K V VGDGA GKTC+LI ++   FP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V ++ FS+    S ENV +KWI E+ H+  GVPIILVG K+DLR+D Q    +   G  P+T+  G+ +   IG+  Y E
Sbjct:   12 KLVIVGDGACGKTCLLIVFSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYE 163          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHOA_CANFA (Transforming protein RhoA OS=Canis familiaris GN=RHOA PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.568e-38
Identity = 77/152 (50.66%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  360 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK--QFFIDHPGAVPITTAXGEELRKLIGSXXYIE 809
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV ++ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+  +  +      P+    G ++   IG+  Y+E
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPTEGRDMANRIGAFGYME 158          
BLAST of CK934147 vs. ExPASy Swiss-Prot
Match: RHO1_KLULA (GTP-binding protein Rho1 OS=Kluyveromyces lactis GN=RHO1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.568e-38
Identity = 81/152 (53.29%), Postives = 102/152 (67.11%), Query Frame = 3
Query:  360 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFF--IDHPGAVPITTAXGEELRKLIGSXXYIE 809
            K V VGDGA GKTC+LI +    FP  YVPTVFDN+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V ++ +S+    S ENV +KWI E+ H+  GVPIILVG K DLR+D Q    +   G  P++ A  +E+   IG+  YIE
Sbjct:   14 KLVIVGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLHFCQGVPIILVGCKADLRNDPQVVEELRAQGLQPVSQAQAQEVADQIGAVDYIE 165          
The following BLAST results are available for this feature:
BLAST of CK934147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOU_MOUSE2.471e-3956.69Rho-related GTP-binding protein RhoU OS=Mus muscul... [more]
RHOA_EMENI2.471e-3953.29GTP-binding protein rhoA OS=Emericella nidulans GN... [more]
RHOU_HUMAN3.227e-3956.69Rho-related GTP-binding protein RhoU OS=Homo sapie... [more]
RHO1_CANAL4.215e-3952.63GTP-binding protein RHO1 OS=Candida albicans GN=RH... [more]
RHOU_BOVIN5.505e-3956.80Rho-related GTP-binding protein RhoU OS=Bos taurus... [more]
RHO1_CAEEL9.390e-3951.97Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RACD_DICDI2.092e-3851.63Rho-related protein racD OS=Dictyostelium discoide... [more]
RHO1_YEAST2.732e-3852.63GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]
RHOA_CANFA3.568e-3850.66Transforming protein RhoA OS=Canis familiaris GN=R... [more]
RHO1_KLULA3.568e-3853.29GTP-binding protein Rho1 OS=Kluyveromyces lactis G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_H10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934147 ID=CK934147; Name=CK934147; organism=Citrus sinensis; type=EST; length=814bp
GGGGAACCGCAAAGCGATTTCTTTCCCCTTCTCTTTCCTCTCTCATTGGC
CATCCCTCGCTTTCTTTTTTTGGTTGGCATTGTTGCTTTCGCCGCTGCTC
TCTCTCTCTCTCTCTCTCTCTGTCTCTCTGCAGATTAGGGTTTAATTACC
TTCGCTACCTTAATTCAAGACTTCTTTTCACTCAATTCCTGAGCTCCCGT
TGACGAACTGAGTTGTTCTCTTTTAGTCTTCGAAATGAGTGAAGTCTGTG
GCAAGAAGTGCACGTAAAGAACCTGAGCAGTCTTCCAAGGGCATTGTCGG
AATAAACTAAAAAAGAGAATAGAGATCTGGTGGCGCAAATGAGCGCGTCG
AGGTTCATAAAGTGCGTCACTGTCGGTGACGGCGCCGTCGGAAAAACTTG
CATGCTTATTTCTTACACCAGCAACACTTTCCCAACGGACTATGTGCCAA
CTGTCTTTGACAATTTCAGTGCGAATGTGGTTGTTGATGGGAGTACGGTC
AACTTAGGGTTATGGGACACTGCTGGTCAGGAGGATTACAATAGATTGAG
ACCGTTAAGTTATAGAGGAGCTGATGTGTTTATTCTTGCATTCTCACTGA
TTAGCAAGGCCAGCTATGAAAATGTCGCCAAGAAGTGGATTCCAGAACTG
AGGCACTATGCGCCTGGTGTTCCAATAATTCTTGTTGGGACTAAGCTAGA
TCTTCGGGATGATAAGCAGTTCTTTATTGATCATCCAGGTGCAGTACCAA
TTACTACAGCTCANGGAGAGGAACTGAGGAAGCTGATTGGATCTCNNNCA
TACATCGAANNNAG
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