CK934151

Overview
NameCK934151
Unique NameCK934151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8154 contig Csv1_Contig8154:297..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13
Identity = 53/129 (41.09%), Postives = 69/129 (53.49%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIDYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R R  E+IHGRWAML  LG +  E L    G+      W  AG     EG   YLG P      SI  ++  +VL++  +E  R + LD       LYPGG++FDPLGLA DP   A L++ EI++ RL
Sbjct:   94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 222          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12
Identity = 54/131 (41.22%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIDYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R+RE ELIH RWA+L  LG LT E L+   G+      W  AG     +G  +YLG        SI   + ++V+++   E  R    SE  LD    LYPGG  FDPLGLA DP+  A L++ EI++ RL
Sbjct:   78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRL 207          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12
Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  177 QRFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            +++RE E+IH RWA+L  LG LT E L+   G+      W  AG     EG   YLG P      +I   + ++V+++  IE  R         LDP   LYP G+ FDPLGLA DP+  A L++ EI++ RL
Sbjct:   82 KKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYP-GESFDPLGLADDPDTFAELKVKEIKNGRL 210          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11
Identity = 53/132 (40.15%), Postives = 67/132 (50.76%), Query Frame = 3
Query:  177 QRFRECELIHGRWAMLATLGALTVEWLT-------GITWQDAGKVELVEGS-SYLGQPL---PFSITTLIWIEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            +R+RE ELIH RWAML  LG  T E L           W  AG     EG   YLG P      +I     ++V+++  IE  R         LDP   LYP G+ FDPLGLA DP+  A L++ EI++ RL
Sbjct:   80 KRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYP-GESFDPLGLADDPDTFAELKVKEIKNGRL 207          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++  +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ EI++ RL
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRL 220          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R RE E+IH RWAML  LG LT E L  +G+      W  AG     EG   YLG P      ++  IW  +V+++  +E  R          DP   +YPGG  FDPLGLA DP+  A L++ EI++ RL
Sbjct:   96 RNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGS-FDPLGLADDPDTFAELKVKEIKNGRL 222          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQRNSEL---DPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            RE E+IH RWAML  LG +T E L   G+      W  AG     EG   YLG P      +++ I   +V+++  +E  R +     + E  +YPGG F DPLGLA DPE  A L++ E+++ RL
Sbjct:   95 RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRL 219          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++  +E  R         +DP   LYPGG F DPLGLA DPE+ A L++ E+++ RL
Sbjct:   94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF-DPLGLAEDPERSAELKVKELKNGRL 218          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++  +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EI++ RL
Sbjct:   91 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRL 215          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++  +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+++ RL
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRL 221          
The following BLAST results are available for this feature:
BLAST of CK934151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CB23_HORVU6.391e-1341.09Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_DUNTE5.410e-1241.22Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO9.229e-1239.10Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.574e-1140.15Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_SINAL2.685e-1140.31Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_PHYPA4.580e-1140.46Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU4.580e-1138.89Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB23_APIGR4.580e-1138.76Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ORYSJ4.580e-1140.31Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_ARATH4.580e-1138.76Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934151 ID=CK934151; Name=CK934151; organism=Citrus sinensis; type=EST; length=522bp
ACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAG
TATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGA
TATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCACTTC
AGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTC
ATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGA
GTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTG
AAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTG
ATATGGATTGAGGTTTTGGTAATTGACTACATTGAGTTCCAAAGAAACTC
AGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATC
CTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCA
GAGATCAGGCACGCCCGCCTTG
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