CK934151
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 6.391e-13 Identity = 53/129 (41.09%), Postives = 69/129 (53.49%), Query Frame = 3 Query: 180 RFRECELIHGRWAMLATLGALTVEWL---TGI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIDYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 R R E+IHGRWAML LG + E L G+ W AG EG YLG P SI ++ +VL++ +E R + LD LYPGG++FDPLGLA DP A L++ EI++ RL Sbjct: 94 RNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 222
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 5.410e-12 Identity = 54/131 (41.22%), Postives = 71/131 (54.20%), Query Frame = 3 Query: 180 RFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIDYIEFQR---NSE--LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 R+RE ELIH RWA+L LG LT E L+ G+ W AG +G +YLG SI + ++V+++ E R SE LD LYPGG FDPLGLA DP+ A L++ EI++ RL Sbjct: 78 RYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRL 207
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 9.229e-12 Identity = 52/133 (39.10%), Postives = 72/133 (54.14%), Query Frame = 3 Query: 177 QRFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 +++RE E+IH RWA+L LG LT E L+ G+ W AG EG YLG P +I + ++V+++ IE R LDP LYP G+ FDPLGLA DP+ A L++ EI++ RL Sbjct: 82 KKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYP-GESFDPLGLADDPDTFAELKVKEIKNGRL 210
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.574e-11 Identity = 53/132 (40.15%), Postives = 67/132 (50.76%), Query Frame = 3 Query: 177 QRFRECELIHGRWAMLATLGALTVEWLT-------GITWQDAGKVELVEGS-SYLGQPL---PFSITTLIWIEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 +R+RE ELIH RWAML LG T E L W AG EG YLG P +I ++V+++ IE R LDP LYP G+ FDPLGLA DP+ A L++ EI++ RL Sbjct: 80 KRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYP-GESFDPLGLADDPDTFAELKVKEIKNGRL 207
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11 Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 3 Query: 180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 R RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++ +E R + P E LYPGG F DPLGLA DPE A L++ EI++ RL Sbjct: 93 RNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKEIKNGRL 220
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11 Identity = 53/131 (40.46%), Postives = 69/131 (52.67%), Query Frame = 3 Query: 180 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 R RE E+IH RWAML LG LT E L +G+ W AG EG YLG P ++ IW +V+++ +E R DP +YPGG FDPLGLA DP+ A L++ EI++ RL Sbjct: 96 RNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGS-FDPLGLADDPDTFAELKVKEIKNGRL 222
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11 Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 3 Query: 186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQRNSEL---DPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 RE E+IH RWAML LG +T E L G+ W AG EG YLG P +++ I +V+++ +E R + + E +YPGG F DPLGLA DPE A L++ E+++ RL Sbjct: 95 RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSF-DPLGLADDPEAFAELKVKELKNGRL 219
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11 Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 3 Query: 186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 RE E+IH RWAML LG + E L G+ W AG EG YLG P +++ I +V+++ +E R +DP LYPGG F DPLGLA DPE+ A L++ E+++ RL Sbjct: 94 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP---LYPGGSF-DPLGLAEDPERSAELKVKELKNGRL 218
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11 Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 3 Query: 186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 RE E+IH RWAML LG + E L G+ W AG EG YLG P ++ IW ++V+++ +E R +DP LYPGG F DPLGLA DPE A L++ EI++ RL Sbjct: 91 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLADDPEAFAELKVKEIKNGRL 215
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11 Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 3 Query: 180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521 R RE E+IH RWAML LG + E L G+ W AG +G YLG P +++ I +V+++ +E R + P E LYPGG F DPLGLA DPE A L++ E+++ RL Sbjct: 94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRL 221 The following BLAST results are available for this feature:
BLAST of CK934151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934151 ID=CK934151; Name=CK934151; organism=Citrus sinensis; type=EST; length=522bpback to top |