CK934151

Overview
NameCK934151
Unique NameCK934151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8154 contig Csv1_Contig8154:297..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQRNSELDP----EKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      +++ I   +V+++  +E  R +   P    E  LYPGG F DPLGLA DPE  A L++ E+++ RL
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF-DPLGLATDPEAFAELKVKELKNGRL 221          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 51/131 (38.93%), Postives = 68/131 (51.91%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R RE E+IH RWAML  LG    E L   G+      W  AG     EG   YLG P      +++ I   +V+++ ++E  R         LDP   LYPGG F DPLGLA DP+  A L++ E+++ RL
Sbjct:   93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPDSFAELKVKELKNGRL 219          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R RE E+IH RWAML  LG +  E L+  G+T     W  AG     EG   YLG P      +++ I   +V+++ ++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EI++ RL
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRL 219          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 52/131 (39.69%), Postives = 71/131 (54.20%), Query Frame = 3
Query:  180 RFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R RE E+IH RWAML  LG +  E L+  G+T     W  AG     EG   YLG P      +++ I   +V+++ ++E  R         LD   ++YPGG F DPLGLA DPE  A L++ EI++ RL
Sbjct:   65 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRL 191          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 48/127 (37.80%), Postives = 65/127 (51.18%), Query Frame = 3
Query:  186 RECELIHGRWAMLATLGALTVEWLTGIT--------WQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIDYIEFQRNSELD---PEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            R  E+IHGRWAML  LG +  E L            W  AG     +G   YLG P      SI  ++  +V+++  +E  R + L        LYPGG++FDPLGLA DP   A L++ EI++ RL
Sbjct:   93 RALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRL 219          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 52/129 (40.31%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++  +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EI++ RL
Sbjct:   95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRL 219          
BLAST of CK934151 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.982e-11
Identity = 53/129 (41.09%), Postives = 68/129 (52.71%), Query Frame = 3
Query:  186 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIDYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIRHARL 521
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++  IE  R         LDP   LYPGG F DPLGLA DPE  A L++ EI++ RL
Sbjct:   94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF-DPLGLADDPEAFAELKVKEIKNGRL 218          
The following BLAST results are available for this feature:
BLAST of CK934151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CB21_ARATH4.580e-1138.76Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB215_PEA4.580e-1138.93Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP5.982e-1139.69Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC5.982e-1139.69Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_SOLLC5.982e-1137.80Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_ORYSJ5.982e-1140.31Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_LEMGI5.982e-1141.09Chlorophyll a-b binding protein of LHCII type I, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934151 ID=CK934151; Name=CK934151; organism=Citrus sinensis; type=EST; length=522bp
ACTACGGGTTCGACCCGTTCGGGCTGGGCAAGCCAGCGGAGTACTTGCAG
TATGACTATGACTCGTTGGACCAGAACTTGGCTAAGAACCCGGCTGGCGA
TATTATTGGGACGAGGATTGAGGCCTCTGACATGCAGTCCACGCCACTTC
AGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCCGTGAGTGTGAGCTC
ATTCATGGACGTTGGGCCATGTTGGCTACTCTCGGTGCCCTCACTGTTGA
GTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAAGGTAGAGTTAGTTG
AAGGATCATCATACCTGGGGCAACCACTTCCATTCTCAATAACAACGTTG
ATATGGATTGAGGTTTTGGTAATTGACTACATTGAGTTCCAAAGAAACTC
AGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGGAAAGTTTTTTGATC
CTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCCACCCTTCAATTGGCA
GAGATCAGGCACGCCCGCCTTG
back to top