CK934157

Overview
NameCK934157
Unique NameCK934157
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length342
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:413..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934157 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 44/118 (37.29%), Postives = 62/118 (52.54%), Query Frame = 2 
Query:    2 ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAV 340
            ISGGH+NPAVTLGL +   +++    FY + Q LG+     ++K          +  G  V  HG   G     G+  EII TF LVYTV+ +A D K+ +    +  +AP+ IGF V
Sbjct:   77 ISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLK---------YVTNGLAVPTHGVAAGLNGLQGVVMEIIITFALVYTVYATAADPKKGS----LGTIAPIAIGFIV 181
[Close]
BLAST of CK934157 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.705e-11
Identity = 47/118 (39.83%), Postives = 64/118 (54.24%), Query Frame = 2 
Query:    2 ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVK----GFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA-TDAKRSARDSHVPILAPLPIGFAV 340
            +SGGH+NPAVT G  +  +++  RA++Y + Q LGAI    +++    G    G   RLA G   V       +GL  EII TF LVY V+S   D KR +    + I+APL IG  V
Sbjct:   87 VSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNGMRPVG--FRLASGVGAV-------NGLVLEIILTFGLVYVVYSTLIDPKRGS----LGIIAPLAIGLIV 191
The following BLAST results are available for this feature:
BLAST of CK934157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
TIP1_TOBAC7.431e-1137.29Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP31_ARATH9.705e-1139.83Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_G08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934157 ID=CK934157; Name=CK934157; organism=Citrus sinensis; type=EST; length=342bp
CATCTCGGGTGGTCATATCAACCCGGCGGTGACACTCGGCCTGTTCTTGG
CGAGGAAGCTGTCGCTGACACGTGCACTTTTCTACATGGTGATGCAGTGT
CTGGGAGCCATCTGCGGTGCTGGCGTTGTAAAGGGTTTCATGGGTGCCGG
CCAATACGGGCGGCTCGCCGGCGGTGCCAACGTCGTAGCTCATGGCTACA
CCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGTACTTTTGTTCTTGTC
TACACAGTTTTCTCTGCCACTGATGCCAAACGGAGCGCCAGGGACTCTCA
TGTTCCTATTTTGGCTCCTCTGCCAATTGGGTTCGCTGTGTT
back to top