CK934162

Overview
NameCK934162
Unique NameCK934162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 3.785e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            M   D   + F+GGL   T + +L   FG YG I+E  ++ DRET +SRGF FVTF      + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBY1B_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.432e-12
Identity = 35/85 (41.18%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            MA  D   + F+GGL   T   +L E FG +G +    ++ DRET +SRGF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKRIKVKQAR 85          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.438e-11
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 3
Query:   90 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            D   + +V  L+WA T   L +AF      + +K+I DR +GRSRGFGF+TF   ++M  A++ MN   L+GR + +N A
Sbjct:  214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.878e-11
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNI 314
            + F+GGL+W T+  SL + FG YGDI E+ ++ D  T RSRGFGFVTF D  S+ D +       LDG+ +
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSV-DKVLTQGTHELDGKKV 99          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
The following BLAST results are available for this feature:
BLAST of CK934162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
HNRGT_HUMAN3.785e-1242.86RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
RBY1B_MOUSE8.432e-1241.18RNA-binding motif protein, Y chromosome, family 1 ... [more]
RBM38_CHICK1.101e-1148.68RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR1.101e-1148.68RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK1.101e-1148.68RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA1.101e-1148.68RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA1.101e-1148.68RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
ROC5_NICSY1.438e-1140.0033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
MSIR6_DROME1.878e-1146.48RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
RBM38_HUMAN2.453e-1147.37RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934162 ID=CK934162; Name=CK934162; organism=Citrus sinensis; type=EST; length=744bp
GGGGGATTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTC
TTAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTT
TAGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCC
ATGAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAAT
GATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGA
TGAGAAGTCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTCG
ACGGCCGTAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGC
GGTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGG
TGGACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGAT
ACGGAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGTTAC
AGCCGTGATGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAG
CGGTGCTTCTGATGGCGGCAGCTGGAGGAATTAGTGTTGTTTAGGATAAA
TTAGGAGCTATGTTATGGTTTCGTGTTTTGATATTTTCCTTGGGTTATGT
TGTGTCGTTTTGATCGGTTCCTGTNNNNNTGTGTTGTTTCGATCTCCCTG
TTTGGTTAANTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAANN
back to top