CK934162

Overview
NameCK934162
Unique NameCK934162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934162_ssr415 microsatellite CK934162_ssr415:415..429. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.204e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBY1A_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus musculus GN=Rbmy1a1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 332
            MA  +   + F+GGL   T   +L E FG +G +    ++ DRET +SRGF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQAR 85          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + F+GGL W TTD SL + F  +G++L+  ++ D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  102 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 329
            + FVGGL + TTD+SL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RMXL3_PANTR (RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 3
Query:   78 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITV 320
            M   D   + FVGGL   T + +L   FG YG I++  +I DR+T +SRGF FVTF      + A   MNG+ LDG+ I V
Sbjct:    1 MMEADRPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMV 81          
BLAST of CK934162 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 3
Query:   90 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 314
            D   + FVGGL+W TT  +L   F  +GDI++  ++ + E+GRSRGFGFVTF D  ++   ++  NG   LDGR I
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77          
The following BLAST results are available for this feature:
BLAST of CK934162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM38_XENTR3.204e-1147.37RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
RBM38_MOUSE4.185e-1147.37RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM24_DANRE4.185e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
RBY1A_MOUSE5.465e-1140.00RNA-binding motif protein, Y chromosome, family 1 ... [more]
YHKF_SCHPO7.138e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM24_HUMAN7.138e-1146.05RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
RMXL3_PANTR9.322e-1143.21RNA-binding motif protein, X-linked-like-3 OS=Pan ... [more]
RB27C_DROME9.322e-1144.74Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934162 ID=CK934162; Name=CK934162; organism=Citrus sinensis; type=EST; length=744bp
GGGGGATTCCGCAGCGGTGCTGTCTCTAAGATTTTTCTTGTAATTTTTTC
TTAGTCCCCATTTTAAGTTTTCTCCTAATGGCTTCAGGCGATGTCGAGTT
TAGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCC
ATGAGGCCTTCGGTGCTTACGGCGATATCCTTGAATCGAAGATAATTAAT
GATCGCGAGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGA
TGAGAAGTCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTCG
ACGGCCGTAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGC
GGTGGCGGTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGG
TGGACGCCGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGAT
ACGGAGGTGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGTTAC
AGCCGTGATGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAG
CGGTGCTTCTGATGGCGGCAGCTGGAGGAATTAGTGTTGTTTAGGATAAA
TTAGGAGCTATGTTATGGTTTCGTGTTTTGATATTTTCCTTGGGTTATGT
TGTGTCGTTTTGATCGGTTCCTGTNNNNNTGTGTTGTTTCGATCTCCCTG
TTTGGTTAANTGTTTGAAAAAAAAAAAAAAAAAAAAAAAAAANN
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