CK934167

Overview
NameCK934167
Unique NameCK934167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:7..637. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_TETTH (Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.799e-28
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:  181 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H42_TETPY (Histone H4, minor OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.799e-28
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:  181 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H41_TETPY (Histone H4, major OS=Tetrahymena pyriformis PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.799e-28
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 1 
Query:  181 NIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +I+GITKPAIRRLARRGGVKRIS  IY+++R VLK FLENV+RDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   26 SIEGITKPAIRRLARRGGVKRISSFIYDDSRQVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H42_BLEJA (Histone H4 (Fragment) OS=Blepharisma japonicum GN=H4 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.775e-28
Identity = 61/75 (81.33%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:  169 VLRDNIQGITKPAIRRLARRGGVKR-ISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQG 390
            V+R+N QGITKPAIRRLARRGGVKR +SGL+Y+ETR VLK+FLE+V+RDAVTYTEHA+R+TVTA+DVVYALKRQG
Sbjct:   15 VIRENNQGITKPAIRRLARRGGVKRTLSGLVYDETRNVLKVFLESVVRDAVTYTEHAKRETVTALDVVYALKRQG 89
[Close]
BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_ENTHI (Histone H4 OS=Entamoeba histolytica PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.144e-28
Identity = 60/74 (81.08%), Postives = 69/74 (93.24%), Query Frame = 1 
Query:  175 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +D ++GITKPAIRRLARRGGVKRI+G +Y+ETR VLK FLE VIRD+VTYTEHA+R+TVTAMDVVYALKRQGRT
Sbjct:   40 QDALKGITKPAIRRLARRGGVKRINGAVYDETRNVLKQFLEQVIRDSVTYTEHAKRRTVTAMDVVYALKRQGRT 113
[Close]
BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_DICDI (Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.620e-26
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:  175 RDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +++I GITKPAIRRLARRGGVKRIS  IYEETR VL+ FL NVIRD+V YTEHA R+TVTAMDVVYALKRQGRT
Sbjct:   29 KEHINGITKPAIRRLARRGGVKRISFPIYEETRNVLRTFLTNVIRDSVAYTEHAGRRTVTAMDVVYALKRQGRT 102
[Close]
BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4G_HUMAN (Histone H4-like protein type G OS=Homo sapiens GN=HIST1H4G PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.300e-25
Identity = 62/76 (81.58%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VL DNIQGITK  IRRLAR GGVKRI GLIYEETR V K+FLENVI  AVT TEHA+RKTVTAM VVY LKRQGRT
Sbjct:   22 VLSDNIQGITKCTIRRLARHGGVKRILGLIYEETRRVFKVFLENVIWYAVTNTEHAKRKTVTAMAVVYVLKRQGRT 97
The following BLAST results are available for this feature:
BLAST of CK934167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_TETTH2.799e-2886.11Histone H4 OS=Tetrahymena thermophila GN=HHF1 PE=1... [more]
H42_TETPY2.799e-2886.11Histone H4, minor OS=Tetrahymena pyriformis PE=1 S... [more]
H41_TETPY2.799e-2886.11Histone H4, major OS=Tetrahymena pyriformis PE=1 S... [more]
H42_BLEJA4.775e-2881.33Histone H4 (Fragment) OS=Blepharisma japonicum GN=... [more]
H4_ENTHI8.144e-2881.08Histone H4 OS=Entamoeba histolytica PE=3 SV=1[more]
H4_DICDI2.620e-2681.08Histone H4 OS=Dictyostelium discoideum GN=H4a PE=1... [more]
H4G_HUMAN1.300e-2581.58Histone H4-like protein type G OS=Homo sapiens GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934167 ID=CK934167; Name=CK934167; organism=Citrus sinensis; type=EST; length=630bp
GGGGACTACAAAAAAAACGAGCAAAGGTTGAGAGTGGGGGAAAAAAGAAA
GAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCGTA
GCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGA
GCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACCAA
GCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCG
GTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTTTTGGAGAAC
GTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACGGT
GACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCT
ATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGGT
TTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGTCTAGCGAGTGGG
TTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGGGGTTTTTATTTT
TTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGAATCTAGTTGTTTGC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top