CK934167 | Citrus Genome Database

Overview


Name	CK934167
Unique Name	CK934167
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	630

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6163	contig	Csv1_Contig6163:7..637.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_DROOR (Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_DROME (Histone H4 OS=Drosophila melanogaster GN=His4 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_DROMA (Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_DROHY (Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_DROER (Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_CHITH (Histone H4 OS=Chironomus thummi thummi GN=His4 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_CHICK (Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_CHAVR (Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_CAIMO (Histone H4 OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_BOVIN (Histone H4 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.267e-35
Identity = 74/76 (97.37%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

The following BLAST results are available for this feature:

BLAST of CK934167 vs. ExPASy Swiss-Prot

BLAST of CK934167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_DROOR	5.267e-35	97.37	Histone H4 OS=Drosophila orena GN=His4 PE=3 SV=3	[more]
H4_DROME	5.267e-35	97.37	Histone H4 OS=Drosophila melanogaster GN=His4 PE=1...	[more]
H4_DROMA	5.267e-35	97.37	Histone H4 OS=Drosophila mauritiana GN=His4 PE=3 S...	[more]
H4_DROHY	5.267e-35	97.37	Histone H4 OS=Drosophila hydei GN=His4 PE=3 SV=2	[more]
H4_DROER	5.267e-35	97.37	Histone H4 OS=Drosophila erecta GN=His4 PE=3 SV=2	[more]
H4_CHITH	5.267e-35	97.37	Histone H4 OS=Chironomus thummi thummi GN=His4 PE=...	[more]
H4_CHICK	5.267e-35	97.37	Histone H4 OS=Gallus gallus GN=H4-I PE=1 SV=2	[more]
H4_CHAVR	5.267e-35	97.37	Histone H4 OS=Chaetopterus variopedatus PE=3 SV=3	[more]
H4_CAIMO	5.267e-35	97.37	Histone H4 OS=Cairina moschata PE=3 SV=2	[more]
H4_BOVIN	5.267e-35	97.37	Histone H4 OS=Bos taurus PE=1 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004540_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934167 ID=CK934167; Name=CK934167; organism=Citrus sinensis; type=EST; length=630bp
GGGGACTACAAAAAAAACGAGCAAAGGTTGAGAGTGGGGGAAAAAAGAAA
GAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCGTA
GCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGA
GCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACCAA
GCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCG
GTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTTTTGGAGAAC
GTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACGGT
GACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCT
ATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGGT
TTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGTCTAGCGAGTGGG
TTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGGGGTTTTTATTTT
TTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGAATCTAGTTGTTTGC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA