CK934167 | Citrus Genome Database

Overview


Name	CK934167
Unique Name	CK934167
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	630

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6163	contig	Csv1_Contig6163:7..637.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_DIAPU (Histone H4 OS=Diadromus pulchellus PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 5.823e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+F +NVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFWQNVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_PHACH (Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.933e-34
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_AGABI (Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 9.933e-34
Identity = 71/76 (93.42%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHA+RKTVTA+DVVYALKR GRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHAKRKTVTALDVVYALKRSGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_PHYPO (Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.297e-33
Identity = 73/76 (96.05%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRIS  IYEETRGVLK FLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISNTIYEETRGVLKTFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_CHLRE (Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.297e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKTFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_MORAP (Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.694e-33
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +LRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_VOLCA (Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.213e-33
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRTVLKNFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_EIMTE (Histone H4 OS=Eimeria tenella PE=3 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.213e-33
Identity = 69/76 (90.79%), Postives = 75/76 (98.68%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEE RGVLK+FLEN+I+D+VTYTEHARRKTVTAMD+VY+LKRQGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEEIRGVLKVFLENIIKDSVTYTEHARRKTVTAMDIVYSLKRQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_ASCSU (Histone H4 OS=Ascaris suum PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 4.930e-33
Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETR VLK+FLENVIRDAVTY EHA+RKTVTAMDVVYALK QGRT
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRSVLKVFLENVIRDAVTYCEHAKRKTVTAMDVVYALKHQGRT 97

[Close]

BLAST of CK934167 vs. ExPASy Swiss-Prot
Match: H4_USTMA (Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 8.409e-33
Identity = 68/76 (89.47%), Postives = 76/76 (100.00%), Query Frame = 1

Query:  169 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 396
            +LRDNIQGITKPAIRRLARRGGVKRISGLIY+ETRGVLK+FLE+VIRD+VTYTEHA+RKTVT++DVVYALKRQGRT
Sbjct:   22 ILRDNIQGITKPAIRRLARRGGVKRISGLIYDETRGVLKLFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 97

The following BLAST results are available for this feature:

BLAST of CK934167 vs. ExPASy Swiss-Prot

BLAST of CK934167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107


Match Name	E-value	Identity	Description
H4_DIAPU	5.823e-34	94.74	Histone H4 OS=Diadromus pulchellus PE=3 SV=3	[more]
H4_PHACH	9.933e-34	93.42	Histone H4 OS=Phanerochaete chrysosporium GN=H4.1 ...	[more]
H4_AGABI	9.933e-34	93.42	Histone H4 OS=Agaricus bisporus GN=hhfA PE=3 SV=2	[more]
H4_PHYPO	1.297e-33	96.05	Histone H4 OS=Physarum polycephalum GN=H41 PE=3 SV...	[more]
H4_CHLRE	1.297e-33	96.05	Histone H4 OS=Chlamydomonas reinhardtii GN=H4-I PE...	[more]
H4_MORAP	1.694e-33	92.11	Histone H4 OS=Mortierella alpina GN=H4.1 PE=3 SV=3	[more]
H4_VOLCA	2.213e-33	96.05	Histone H4 OS=Volvox carteri GN=H4-I PE=3 SV=2	[more]
H4_EIMTE	2.213e-33	90.79	Histone H4 OS=Eimeria tenella PE=3 SV=3	[more]
H4_ASCSU	4.930e-33	93.42	Histone H4 OS=Ascaris suum PE=3 SV=2	[more]
H4_USTMA	8.409e-33	89.47	Histone H4 OS=Ustilago maydis GN=HHF1 PE=3 SV=4	[more]

Pages

Properties


Property Name	Value
Genbank description	CGF1004540_F04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934167 ID=CK934167; Name=CK934167; organism=Citrus sinensis; type=EST; length=630bp
GGGGACTACAAAAAAAACGAGCAAAGGTTGAGAGTGGGGGAAAAAAGAAA
GAAAAATTCCCAATTAGTTTGAAAACCGTAATTAGCATTTTAATTTCGTA
GCAGAATGTCTGGACGCGGCAAGGGAGGCAAGGGATTGGGGAAGGGAGGA
GCCAAGAGGCATCGCAAGGTGTTGCGTGATAACATTCAGGGCATCACCAA
GCCGGCTATTCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCG
GTCTCATCTACGAGGAGACACGCGGCGTCCTCAAGATCTTTTTGGAGAAC
GTCATTCGCGATGCTGTGACCTACACTGAGCACGCTCGCCGAAAGACGGT
GACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGGCAGGACTCTCT
ATGGGTTTGGTGGTTGATGTGGCGTCGTTTTGTATTTTGTGTTTTAGGGT
TTTCCTTTTTTCCTGTAAATCAGTGAACGTGGTTGTGTCTAGCGAGTGGG
TTTAAATTGGAGGCAACTTGTATTTGCCGTTTCCTAGGGGTTTTTATTTT
TTTGGTTCATTGGTGTTTTCATCTTTTGCAATGAGAATCTAGTTGTTTGC
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAA