CK934169

Overview
NameCK934169
Unique NameCK934169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934169_ssr77 microsatellite CK934169_ssr77:77..86. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1957 contig Csv1_Contig1957:1..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_DROME (Protein translation factor SUI1 homolog OS=Drosophila melanogaster GN=CG17737 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.668e-25
Identity = 53/101 (52.48%), Postives = 72/101 (71.29%), Query Frame = 2
Query:  254 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            DPFA+A   +        VHIR+QQRNGRK+LTTVQGL  E+   KI++  KKEF CNGTV++ PE G+V+QLQGDQR+N+  +L + G+ K + +K+H F
Sbjct:   10 DPFADAIKGNDDDIQDGLVHIRIQQRNGRKTLTTVQGLSAEYDLKKIVRSCKKEFACNGTVIEHPEYGEVLQLQGDQRENICQWLTKVGLAKPDQLKVHGF 110          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: SUI1_SCHPO (Protein translation factor sui1 OS=Schizosaccharomyces pombe GN=sui1 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  254 DPFAEANAEDSGAGSKDYVHIRVQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            DPFA+   +D  A   + +HIR+QQRNGRK+LTTVQGL +EF   +IL+ LKK+F CNGT+V+D +LG+VIQLQGDQR  V  FL Q   ++K+ IKIH F
Sbjct:   11 DPFADTGDDD--AQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRALKKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109          
BLAST of CK934169 vs. ExPASy Swiss-Prot
Match: EIF1_CHICK (Eukaryotic translation initiation factor 1 (Fragment) OS=Gallus gallus GN=EIF1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.560e-22
Identity = 45/79 (56.96%), Postives = 62/79 (78.48%), Query Frame = 2
Query:  320 VQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEFIKIHSF 556
            +QQRNGRK+LTTVQG+  ++   K++K  KK+F CNGTV++ PE G+VIQLQGDQRKN+  FLV+ G+ K + +K+H F
Sbjct:    1 IQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 79          
The following BLAST results are available for this feature:
BLAST of CK934169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_DROME1.668e-2552.48Protein translation factor SUI1 homolog OS=Drosoph... [more]
SUI1_SCHPO4.854e-2557.43Protein translation factor sui1 OS=Schizosaccharom... [more]
EIF1_CHICK6.560e-2256.96Eukaryotic translation initiation factor 1 (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_F06 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_F06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934169 ID=CK934169; Name=CK934169; organism=Citrus sinensis; type=EST; length=852bp
GGGGGTTGTGTGGTCAAGAGAAGCCCGTCTGCACTTATATAACGACATTA
TAACCCAAACACAATCCTTATCTCTGTCTCTCTCTCGCTTCTCTTGTTTC
CGCTCTCGTAAGGCAGTTTGATTCGCAATCTTCCTCTTAAGCTAAGAGCA
ATTTAAGTGAATTGAAGCCAATTTCTTGCTGGTTACGGACTCTTTGACAC
TCCAACAACCAAGTTTCATGTCTGAATTTGACACCCAGATTCCATCTGCC
TTTGATCCCTTTGCTGAGGCAAATGCTGAGGACTCAGGTGCTGGTTCAAA
AGATTATGTGCATATTCGCGTGCAGCAACGTAACGGGAGGAAAAGCCTGA
CAACTGTGCAAGGGTTGAAGAAAGAATTCAGCTACAACAAGATTCTCAAG
GACCTCAAGAAAGAGTTCTGCTGTAATGGTACTGTTGTACAGGACCCTGA
GTTAGGCCAGGTCATACAGCTTCAGGGTGACCAGAGGAAGAATGTGTCCA
CCTTCCTCGTTCAGGCTGGTATTGTGAAGAAGGAATTCATCAAAATTCAT
AGTTTCTAAATAGTGGGAGCCAAGTTGCTATATGTTGTTTATCCATCTCC
AACTATTGGTAGCAAGAAGTATATGATCTATATATTAATTTATTATCGAC
TGTCGTGTAATGTAACGCTGTCCAAACAAAAAGTTTGATGCAAGCTTGCT
TGTGCGTTTAAACTTTTTAGTTTGTAGTAGTGTTCTTTTGTTTGGGAATA
TTATGGTTTCTTCCAAGACTTATTTTAAGCAAAATAAAATGTATTCCTGC
TTTCAATTCATATGAATAGTTGTTTGTTCCAAAAAAAAAAAAAAAAAAAA
AA
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