CK934188

Overview
NameCK934188
Unique NameCK934188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:242..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.982e-28
Identity = 58/64 (90.62%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAVPITT QGEEL+KLIG+ VYIECSSKTQ
Sbjct:   99 WIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC2_ARATH (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.636e-26
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PEL+HYAPG+PI+LVGTKLDLRDDKQFL DHPGA  ITTAQGEELRK+IGA  Y+ECSSKTQ
Sbjct:  100 WLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.791e-26
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYAP VPI+LVGTKLDLR+D+Q+L DHPGA PITTAQGEEL+K IGA VY+ECSSKTQ
Sbjct:  100 WIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.645e-26
Identity = 53/64 (82.81%), Postives = 60/64 (93.75%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYAP VPI+LVGTKLDLRDDKQFL+D+PGA+ ITT+QGEEL+K+IGA  YIECSSKTQ
Sbjct:  100 WIPELRHYAPNVPIVLVGTKLDLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC3_ORYSJ (Rac-like GTP-binding protein 3 OS=Oryza sativa subsp. japonica GN=RAC3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+HYAPGVPI+LVGTKLDLR+DK +L DHPG +P+TTAQGEELRK IGA  YIECSSKTQ
Sbjct:  102 WIPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQ 165          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC10_ARATH (Rac-like GTP-binding protein ARAC10 OS=Arabidopsis thaliana GN=ARAC10 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 52/64 (81.25%), Postives = 59/64 (92.19%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+H+APGVP++LVGTKLDLR+DK +LADHPG  P+TTAQGEELRKLIGA  YIECSSKTQ
Sbjct:  102 WIPELQHFAPGVPLVLVGTKLDLREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQ 165          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.060e-25
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYA  VP++LVGTKLDLRDDKQFL DHPGA PI+T+QGEEL+K+IGA  YIECSSKTQ
Sbjct:  100 WIPELRHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.809e-25
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPELRHYAP VPI+LVGTKLDLR+DKQF  DHPG  PI+TAQGEEL+++IGA  YIECSSKTQ
Sbjct:  100 WIPELRHYAPNVPIVLVGTKLDLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQ 163          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC4_ORYSJ (Rac-like GTP-binding protein 4 OS=Oryza sativa subsp. japonica GN=RAC4 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.030e-25
Identity = 51/64 (79.69%), Postives = 57/64 (89.06%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PEL+HYAPGVPI+LVGTKLDLR+DK +L DHP  VP+TTAQGEELRK IGA  YIECSSKTQ
Sbjct:  102 WLPELQHYAPGVPIVLVGTKLDLREDKHYLLDHPSLVPVTTAQGEELRKHIGATCYIECSSKTQ 165          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC8_ARATH (Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.411e-24
Identity = 48/64 (75.00%), Postives = 58/64 (90.62%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            WIPEL+H+APGVPI+LVGTK+DLR+D+ +L+DHPG  P+TT+QGEELRK IGA  YIECSSKTQ
Sbjct:  102 WIPELQHFAPGVPIVLVGTKMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQ 165          
The following BLAST results are available for this feature:
BLAST of CK934188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RAC4_ARATH2.982e-2890.63Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC2_ARATH1.636e-2682.81Rac-like GTP-binding protein ARAC2 OS=Arabidopsis ... [more]
RAC2_LOTJA2.791e-2682.81Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RAC9_GOSHI3.645e-2682.81Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
RAC3_ORYSJ4.760e-2681.25Rac-like GTP-binding protein 3 OS=Oryza sativa sub... [more]
RAC10_ARATH4.760e-2681.25Rac-like GTP-binding protein ARAC10 OS=Arabidopsis... [more]
RAC13_GOSHI1.060e-2581.25Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RAC7_ORYSJ1.809e-2579.69Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAC4_ORYSJ4.030e-2579.69Rac-like GTP-binding protein 4 OS=Oryza sativa sub... [more]
RAC8_ARATH3.411e-2475.00Rac-like GTP-binding protein ARAC8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934188 ID=CK934188; Name=CK934188; organism=Citrus sinensis; type=EST; length=287bp
TTTTTTTTTTTAACTAGCTTCTCATTTCCTCTTGTTCTAATGCTTGATAT
CTGATTGTGGTGTGCTGATGATTTTTTTTTTAAACAATGTATAGTGGATT
CCTGAGTTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGAC
GAAGCTCGATCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTG
CAGTGCCAATTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGT
GCTCCTGTTTACATTGAGTGTAGTTCCAAAACACAAC
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