CK934188

Overview
NameCK934188
Unique NameCK934188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:242..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_ORYSJ (Rac-like GTP-binding protein 1 OS=Oryza sativa subsp. japonica GN=RAC1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.403e-23
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PELR +APGVP++LVGTKLDLR+D+ +LADHP +  ITT QGEELRKLIGA  YIECSSKTQ
Sbjct:  104 WMPELRRFAPGVPVVLVGTKLDLREDRAYLADHPASSIITTEQGEELRKLIGAVAYIECSSKTQ 167          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC2_ORYSJ (Rac-like GTP-binding protein 2 OS=Oryza sativa subsp. japonica GN=RAC2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.433e-22
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PELR +AP VPI+LVGTKLDLRD + +LADHP A  ITTAQGEELRK IGA  YIECSSKTQ
Sbjct:  101 WMPELRRFAPNVPIVLVGTKLDLRDHRSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQ 164          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC7_ARATH (Rac-like GTP-binding protein ARAC7 OS=Arabidopsis thaliana GN=ARAC7 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.098e-20
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PELR +AP VPI+LVGTKLDLRDDK +LADH     IT+ QGEELRK IGA  YIECSSKTQ
Sbjct:  100 WMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQ 161          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.361e-19
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PELRHYAP VPI+LVGTK DLRD+ QF  ++PGA  I   QG+ELRK IGA  YIECSSK Q
Sbjct:  112 WVPELRHYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQ 175          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC2_DROME (Ras-related protein Rac2 OS=Drosophila melanogaster GN=Rac2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.756e-12
Identity = 37/66 (56.06%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P VPIILVGTKLDLRDDKQ +         PIT  QG  + K I A  Y+ECS+ TQ
Sbjct:   97 WFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKLTPITYPQGLAMAKEIAAVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.294e-12
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PEL+ YAP VP +L+GT++DLRDD + LA  +     PI   QG++L K IGA  Y+ECS+ TQ
Sbjct:  103 WVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQ 168          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PEL+ YAP VP +L+GT++DLRDD + LA  +     P+   QG++L K IGA  Y+ECS+ TQ
Sbjct:  103 WVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQ 168          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W+PEL+ YAP VP +L+GT++DLRDD + LA  +     P+   QG++L K IGA  Y+ECS+ TQ
Sbjct:  103 WVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQ 168          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_RAT (Ras-related C3 botulinum toxin substrate 1 OS=Rattus norvegicus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.912e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_MOUSE (Ras-related C3 botulinum toxin substrate 1 OS=Mus musculus GN=Rac1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.912e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
The following BLAST results are available for this feature:
BLAST of CK934188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RAC1_ORYSJ8.403e-2375.00Rac-like GTP-binding protein 1 OS=Oryza sativa sub... [more]
RAC2_ORYSJ1.433e-2276.56Rac-like GTP-binding protein 2 OS=Oryza sativa sub... [more]
RAC7_ARATH5.098e-2073.44Rac-like GTP-binding protein ARAC7 OS=Arabidopsis ... [more]
RAC9_ARATH7.361e-1968.75Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
RAC2_DROME1.756e-1256.06Ras-related protein Rac2 OS=Drosophila melanogaste... [more]
RHOQ_HUMAN2.294e-1251.52Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOQ_RAT2.995e-1250.00Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]
RHOQ_MOUSE2.995e-1250.00Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
RAC1_RAT3.912e-1254.55Ras-related C3 botulinum toxin substrate 1 OS=Ratt... [more]
RAC1_MOUSE3.912e-1254.55Ras-related C3 botulinum toxin substrate 1 OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934188 ID=CK934188; Name=CK934188; organism=Citrus sinensis; type=EST; length=287bp
TTTTTTTTTTTAACTAGCTTCTCATTTCCTCTTGTTCTAATGCTTGATAT
CTGATTGTGGTGTGCTGATGATTTTTTTTTTAAACAATGTATAGTGGATT
CCTGAGTTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGAC
GAAGCTCGATCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTG
CAGTGCCAATTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGT
GCTCCTGTTTACATTGAGTGTAGTTCCAAAACACAAC
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