CK934188

Overview
NameCK934188
Unique NameCK934188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:242..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_HUMAN (Ras-related C3 botulinum toxin substrate 1 OS=Homo sapiens GN=RAC1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.912e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_CAVPO (Ras-related C3 botulinum toxin substrate 1 (Fragment) OS=Cavia porcellus GN=RAC1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.912e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ
Sbjct:    3 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 68          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_CANFA (Ras-related C3 botulinum toxin substrate 1 OS=Canis familiaris GN=RAC1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.912e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_BOVIN (Ras-related C3 botulinum toxin substrate 1 OS=Bos taurus GN=RAC1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.912e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC1_DROME (Ras-related protein Rac1 OS=Drosophila melanogaster GN=Rac1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.110e-12
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPSTPIILVGTKLDLRDDKNTIEKLRDKKLAPITYPQGLAMAKEIGAVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+  + P VPIILVGTK+D+RDD + +        VPI   QG+EL K IGA  YIECS+ TQ
Sbjct:   97 WKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRLAEKNIVPIQPPQGDELAKKIGAVKYIECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 283
            W PE+ H+AP VPIILVGTKLD R+D   +      G   I TA+GEEL+  I A  YIECS+KT
Sbjct:  101 WHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKT 165          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKT 283
            W PE+ H+ P VP ILVGTKLD RDD+  L      G  PITT QG +L + I A  Y+ECS+KT
Sbjct:  100 WYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKT 164          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RACA_ENTHI (Rho-related protein racA OS=Entamoeba histolytica GN=RACA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.536e-11
Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+ H+ P  P +LVGTKLD+R+DK+ L   +     PITT QGE   K IGA  YIECS+ TQ
Sbjct:   97 WQPEVSHHCPKTPCLLVGTKLDMREDKEQLKRLEEKKITPITTEQGEAKCKDIGAVKYIECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC2_HUMAN (Ras-related C3 botulinum toxin substrate 2 OS=Homo sapiens GN=RAC2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.536e-11
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ
Sbjct:   97 WFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 162          
The following BLAST results are available for this feature:
BLAST of CK934188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RAC1_HUMAN3.912e-1254.55Ras-related C3 botulinum toxin substrate 1 OS=Homo... [more]
RAC1_CAVPO3.912e-1254.55Ras-related C3 botulinum toxin substrate 1 (Fragme... [more]
RAC1_CANFA3.912e-1254.55Ras-related C3 botulinum toxin substrate 1 OS=Cani... [more]
RAC1_BOVIN3.912e-1254.55Ras-related C3 botulinum toxin substrate 1 OS=Bos ... [more]
RAC1_DROME5.110e-1254.55Ras-related protein Rac1 OS=Drosophila melanogaste... [more]
RECG_ENTHI1.942e-1153.03Rho-related protein racG OS=Entamoeba histolytica ... [more]
RACC_ENTHI1.942e-1155.38Rho-related protein racC OS=Entamoeba histolytica ... [more]
RACC_DICDI1.942e-1153.85Rho-related protein racC OS=Dictyostelium discoide... [more]
RACA_ENTHI2.536e-1153.03Rho-related protein racA OS=Entamoeba histolytica ... [more]
RAC2_HUMAN2.536e-1153.03Ras-related C3 botulinum toxin substrate 2 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934188 ID=CK934188; Name=CK934188; organism=Citrus sinensis; type=EST; length=287bp
TTTTTTTTTTTAACTAGCTTCTCATTTCCTCTTGTTCTAATGCTTGATAT
CTGATTGTGGTGTGCTGATGATTTTTTTTTTAAACAATGTATAGTGGATT
CCTGAGTTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGAC
GAAGCTCGATCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTG
CAGTGCCAATTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGT
GCTCCTGTTTACATTGAGTGTAGTTCCAAAACACAAC
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