CK934188

Overview
NameCK934188
Unique NameCK934188
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12 contig Csv1_Contig12:242..528. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC2_BOVIN (Ras-related C3 botulinum toxin substrate 2 OS=Bos taurus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.536e-11
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ
Sbjct:   97 WFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC2_MOUSE (Ras-related C3 botulinum toxin substrate 2 OS=Mus musculus GN=Rac2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.312e-11
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PIILVGTKLDLRDDK  +         PIT  QG  L K I +  Y+ECS+ TQ
Sbjct:   97 WFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKDIDSVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC3_MOUSE (Ras-related C3 botulinum toxin substrate 3 OS=Mus musculus GN=Rac3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.378e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PI+LVGTKLDLRDDK   + L D   A PIT  QG  + + IG+  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: RAC3_HUMAN (Ras-related C3 botulinum toxin substrate 3 OS=Homo sapiens GN=RAC3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.378e-11
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+RH+ P  PI+LVGTKLDLRDDK   + L D   A PIT  QG  + + IG+  Y+ECS+ TQ
Sbjct:   97 WYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.636e-11
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDD---KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+ H+ PGVP ++VGT++DLRDD   +Q LA      P+T  QGE L + +GA  Y+ECS+ TQ
Sbjct:   97 WFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLA-RQHQHPLTHEQGERLARELGAVKYVECSALTQ 162          
BLAST of CK934188 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.636e-11
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   95 WIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ 286
            W PE+ H+ PGVPII+VGT+ DLR+D   L         PIT  QGE+L K + A  Y+ECS+ TQ
Sbjct:   97 WFPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPITQEQGEKLAKELRAVKYVECSALTQ 162          
The following BLAST results are available for this feature:
BLAST of CK934188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RAC2_BOVIN2.536e-1153.03Ras-related C3 botulinum toxin substrate 2 OS=Bos ... [more]
RAC2_MOUSE3.312e-1153.03Ras-related C3 botulinum toxin substrate 2 OS=Mus ... [more]
RAC3_MOUSE7.378e-1153.73Ras-related C3 botulinum toxin substrate 3 OS=Mus ... [more]
RAC3_HUMAN7.378e-1153.73Ras-related C3 botulinum toxin substrate 3 OS=Homo... [more]
CDC42_SCHPO9.636e-1149.25Cell division control protein 42 homolog OS=Schizo... [more]
CDC42_CANAL9.636e-1150.00Cell division control protein 42 homolog OS=Candid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004540_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934188 ID=CK934188; Name=CK934188; organism=Citrus sinensis; type=EST; length=287bp
TTTTTTTTTTTAACTAGCTTCTCATTTCCTCTTGTTCTAATGCTTGATAT
CTGATTGTGGTGTGCTGATGATTTTTTTTTTAAACAATGTATAGTGGATT
CCTGAGTTGAGGCATTATGCACCTGGTGTTCCAATAATTCTTGTCGGGAC
GAAGCTCGATCTTCGGGATGATAAGCAGTTCCTTGCAGATCACCCTGGTG
CAGTGCCAATTACCACGGCCCAAGGGGAGGAATTGAGAAAGTTGATAGGT
GCTCCTGTTTACATTGAGTGTAGTTCCAAAACACAAC
back to top