CK934194

Overview
NameCK934194
Unique NameCK934194
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:72..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934194 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.070e-11
Identity = 52/187 (27.81%), Postives = 76/187 (40.64%), Query Frame = 2 
Query:  233 EVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVRPGDHV-IPCYQAECRECKFCKSGKTNLCGKVRGATGAGVMMNDRKSRFSINGKPIYHFMGTSTFSQYT---VVHDVSVAKIDPQAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGCKAAG 781
            EVR+K+L+  +CH+D +    +    ++P + GHE  G V  +G  V++   GD V + C    CR C+ C+  + N C K   AT  GV                 H  GT  +  Y+   VV +    KI    PL     L C   +    +       P   V + GLG +G       KA G
Sbjct:   40 EVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAI-ATYNGV-----------------HHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVRFAKAFG 208
The following BLAST results are available for this feature:
BLAST of CK934194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
CADH6_ARATH8.070e-1127.81Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934194 ID=CK934194; Name=CK934194; organism=Citrus sinensis; type=EST; length=800bp
GGGGACCTCTGTTGCCGGCAGCCACTCTCAGATCGTGTCACGTCCCTTTT
GAATAATAATATCTATCTGCATCTACTCGTTTCTTTTTGTGGTCTGTTTT
TCATTCTCATTTTCATTGTCAGCAGCCATGTCTACTGAAGGTCAAGTCAT
CACATGCAAAGCGGCGGTGGCCTGGGAACCCAACAAGGCATTGGTGATTG
AGGATGTGCAGGTTGCTCCGCCTCAGGCTGGCGAGGTCCGAATCAAGATT
CTCTTCACTGCTCTCTGCCACACTGATGCTTACACCTGGAGCGGCAAGGA
TCCTGAAGGTCTCTTCCCCTGTATCCTAGGTCATGAGGCTGCTGGGATTG
TGGAGAGTGTTGGTGAAGGTGTGACCGAGGTTCGACCAGGTGATCATGTC
ATCCCTTGTTACCAGGCAGAATGCCGAGAGTGCAAGTTTTGCAAGTCTGG
AAAGACTAACCTCTGTGGTAAGGTTAGGGGTGCCACTGGTGCTGGTGTCA
TGATGAATGACCGCAAGAGCCGTTTCTCGATAAATGGAAAGCCTATCTAT
CACTTCATGGGAACCTCAACATTTAGCCAGTACACAGTTGTGCATGATGT
TAGTGTTGCAAAGATTGACCCACAAGCTCCTTTGGACAAAGTATGCCTTC
TTGGCTGTGGTGTTCCTACTGGTCTTGGAGCAGTTTGGAACACTGCAAAA
GTGGAGCCGGGTTCTATAGTTGCTGTTTTTGGCCTTGGGACTGTTGGCCT
TGCTGTGGCAGAGGGGTGCAAGGCAGCTGGAGCTTCACGTGTTANTGGTA
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