CK934200

Overview
NameCK934200
Unique NameCK934200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:42..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.523e-32
Identity = 76/155 (49.03%), Postives = 109/155 (70.32%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSS---QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 524
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ S++S+  T+ERY+K    A   N +     E+++   QQE  KL+ +  ++Q S R L+GE +G ++ KEL +LE +L+ S+ +IRS + + +   +  +Q +E
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKK----AISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKRE 173          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.430e-32
Identity = 75/153 (49.02%), Postives = 110/153 (71.90%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 524
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K C+  +   ++S  EA     QQE  KL+A+   LQ   RN+LGE L  L+ ++L++LE++++  + +IRS + + +   +  +Q +E
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTGSIS--EANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKRE 173          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 4.430e-32
Identity = 81/155 (52.26%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLL 533
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF SSSS+ KT+ERYQK        +   R      S+ E   L  + E L+ S R ++GE L   + +EL+ LE QLD SL +IR+ + Q + +   +L+ KE+ L
Sbjct:    8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNH--KRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNL 160          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.786e-32
Identity = 75/153 (49.02%), Postives = 108/153 (70.59%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK-CNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 524
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVAL++FSNRG+LYE+ +++S+  T+ERY+K C+  +   +VS  EA     QQE  KL+A+   L    RN++GE L  +  KEL++LE++++  + +IRS + + +   +  +Q +E
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEY-ANNSVKATIERYKKACSDSSNTGSVS--EANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKRE 173          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.870e-32
Identity = 74/152 (48.68%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 524
            +KRIEN  NRQVTF KRR+GLLKKAYELSVLCDAEVAL++FS+RG+LYE+ S++S+ +T+ERY+K N      +  A E      QQE  KLK +   LQ S R L+G+ +  +N +EL+ LE +LD  L +IR+ + + +   +  +Q +E
Sbjct:   50 IKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEY-SNNSVKETIERYKKANSDTSNASTVA-EINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRE 199          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.870e-32
Identity = 72/152 (47.37%), Postives = 106/152 (69.74%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 524
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS RG+LYE+ +++++  T+ERY+K    +   + + +E      QQE  KL+ + + +Q S RNL+G+ L  L+ KEL+ +E +L+ ++ +IRS + + +L  +   Q +E
Sbjct:    8 IKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNNIRSTIERYKKACSDSTNTS-TVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKRE 157          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.289e-31
Identity = 74/152 (48.68%), Postives = 104/152 (68.42%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 524
            +KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVALI+FS+RG+LYE+ +++S+  T+ERY+K    +     S  EA     QQE  KL+A+   LQ   RN LGE L  LN ++L +LE++++  + +IR+ + + +   +  +Q +E
Sbjct:   24 IKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-ANNSVKATIERYKKACSDSSNTG-SIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKRE 173          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.898e-31
Identity = 75/155 (48.39%), Postives = 103/155 (66.45%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLL 533
            LKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL +IR  +T+ +   + +L+ KE+ L
Sbjct:    8 LKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTL 160          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.397e-31
Identity = 76/159 (47.80%), Postives = 110/159 (69.18%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQ---EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLS 536
            +KRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEV+LIIFS +GKLYEF +SS+M  T++RY +      +  VS +   E + Q    E   +  + E L+ S+R LLGE +G  + +EL+ +E+QL+ S+K IR+ +TQ   + + +L+ KE+ L+
Sbjct:    8 MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEF-ASSNMQDTIDRYLR----HTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALA 161          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.425e-30
Identity = 75/155 (48.39%), Postives = 102/155 (65.81%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLL 533
            LKRIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYEF S+ S+ KT++RY+   Y     N    +      + + L L  + EAL  S+R +LGE L   + +EL  LE +L+ SL  IR  +T+ +   + +L+ KE+ L
Sbjct:    8 LKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKA--YTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTL 160          
The following BLAST results are available for this feature:
BLAST of CK934200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
AG_ARATH1.523e-3249.03Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_TOBAC4.430e-3249.02Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AGL14_ARATH4.430e-3252.26Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
AG_SOLLC5.786e-3249.02Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
MAD58_ORYSJ9.870e-3248.68MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AGL11_ARATH9.870e-3247.37Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
AG_PETHY1.289e-3148.68Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
MAD56_ORYSJ4.898e-3148.39MADS-box transcription factor 56 OS=Oryza sativa s... [more]
SOC1_ARATH6.397e-3147.80MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD56_ORYSI1.425e-3048.39MADS-box transcription factor 56 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934200 ID=CK934200; Name=CK934200; organism=Citrus sinensis; type=EST; length=569bp
GGGGATATGAATATATAGTGATAGAAGAAGAAAGAAAGGAGAAGAAAATG
GGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCA
AGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGC
TTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGA
GGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGA
GAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAA
GGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCA
CGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACT
TGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATA
TGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACC
CTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAACAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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