CK934200

Overview
NameCK934200
Unique NameCK934200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:42..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.579e-21
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 539
            ++RI+N   RQVTF+KRR GL KKA ELS+LCDAEV L++FS  GKL++F +S+SM + ++RY   +        S  + L+        +LK          R + GEEL  LN ++L+ LE+ L+  L  +  T+++ +LD +  L+ K   L E
Sbjct:   27 IRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQF-ASTSMEQIIDRYNSHSKTLQRAEPSQLD-LQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQLIE 181          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 64/158 (40.51%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 539
            +KRIEN+ NRQVT++KRRNGL KKA EL+VLCDA+V++I+ S+ GKL+EF S S   K L + YQK         V    +     Q++  KLK     L++  R  +GE L  LN ++LE L   +D SLK IR  + + + + +   + K + + E
Sbjct:    8 IKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQK------TVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEE 159          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 63/153 (41.18%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKE 524
            +KRIEN  NRQVT++KRR G++KKA EL+VLCDA+VA+I+FS+ GK +EFCS S+ +K + +RYQ+          S       + Q+    LK     L+   R  +GE+L  L   EL  LE+ +D +LK++R  R  +++ T TE   K+
Sbjct:    8 IKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRH-RKYHVITTQTETYKKK 153          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.063e-21
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ-QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 539
            +KRIENK +RQVTF+KRRNGL++KA +LS+LC++ +A+++ S  GKLY+  S  +M K ++RY+         +    EAL+L+ + + YL LK   E L+  Q  L    +   +   L SLE QL+ +L   R+ +T+ M+  +  LQ  E LL E
Sbjct:    8 IKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYE-------IHHADELEALDLAEKTRNYLPLK---ELLEIVQSKLEESNVDNASVDTLISLEEQLETALSVTRARKTELMMGEVKSLQKTENLLRE 155          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.002e-21
Identity = 61/162 (37.65%), Postives = 98/162 (60.49%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSML-KTLERYQKCN----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 539
            +KRIEN  NR VTF+KRRNGL+KKA E++VLCDA+VALIIF++ GK+ ++C  S  L   L++YQK +    + A   N+S           E  ++K   ++LQ   R+L GE++  LN K L ++E  ++  L ++R     + ++ L   +  E++++E
Sbjct:    8 IKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGKKLWDAKHENLS----------NEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVR----DHQMEILISKRRNEKMMAE 155          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.838e-21
Identity = 62/158 (39.24%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSS-MLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 539
            +K+IEN+  RQVTF+KRR GL+KK  ELS+LCDA + LI+FS  GKL EFCS  + M + ++RY   N G   P+    +  +L  + E L+ +     L+   R   G +L  +   EL+ LERQL+ S+ ++R  + + M   L  L  K ++L E
Sbjct:    8 IKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTN-GLRLPD-HHDDQEQLHHEMELLRRETC--NLELRLRPFHGHDLASIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEE 161          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 56/152 (36.84%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHK 521
            LK+IEN  NRQVTF+KRR GLLKKA EL++LCDA++ +I+FS  GK+YE+ S    +  + +RY K    AP       + ++    QE  ++K     L+   R  +G++L  L  +++ +LE+Q++ SL ++R  + Q +   L E+  +
Sbjct:    8 LKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRYLK----APSTRFEEMD-VQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMHSR 154          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.746e-20
Identity = 55/145 (37.93%), Postives = 92/145 (63.45%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMLKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYM 491
            +KRIEN  NRQVT++KRRNG++KKA E+SVLCDA V++IIF++ GK++EFCS S++++  L+ Y K         +S +   +   +    E  ++K   +++Q   R+L GE++  LN KEL  LE  L+     +++ + +++
Sbjct:    8 IKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHK---------LSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEFV 143          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.890e-20
Identity = 54/158 (34.18%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNS-KELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 539
            +KRIE+   RQVTF+KRR G LKKA EL+VLCDA+V +++FS++GKL++FCS   +L  +E + +         +      +     E  +L+   + L+ S R   GE+L  +++  EL  L+ QL+ SL ++ + + + M   L +++   Q + E
Sbjct:    8 MKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVIL--MELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHE 163          
BLAST of CK934200 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.081e-20
Identity = 64/178 (35.96%), Postives = 104/178 (58.43%), Query Frame = 3
Query:   69 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY--QKCNYGA--PEPNV--------------SAREALELSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSE 539
            ++RIE+   RQVTF+KRR GL KKA EL+VLCDA+VAL++FS+ GKL +F +SS+M + +++Y     N G    +P++              ++   + L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E
Sbjct:    8 IRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAE 184          
The following BLAST results are available for this feature:
BLAST of CK934200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD47_ORYSJ1.579e-2138.22MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MADS1_PETHY2.063e-2140.51Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
MAD16_ORYSJ2.063e-2141.18MADS-box transcription factor 16 OS=Oryza sativa s... [more]
AGL31_ARATH2.063e-2139.24Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
PIST_ARATH6.002e-2137.65Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
TT16_ARATH7.838e-2139.24Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
MAD31_ORYSJ1.746e-2036.84MADS-box transcription factor 31 OS=Oryza sativa s... [more]
GLOB_ANTMA1.746e-2037.93Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
MAD30_ORYSJ3.890e-2034.18MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD55_ORYSJ5.081e-2035.96MADS-box transcription factor 55 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934200 ID=CK934200; Name=CK934200; organism=Citrus sinensis; type=EST; length=569bp
GGGGATATGAATATATAGTGATAGAAGAAGAAAGAAAGGAGAAGAAAATG
GGAAGGGGTAGGGTTGAGTTGAAGAGGATAGAGAACAAGATCAACAGGCA
AGTGACCTTTGCAAAGAGAAGAAATGGCCTATTGAAGAAAGCTTATGAGC
TTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTTCTCCAATAGA
GGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACGCTTGA
GAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAATGTGTCCGCAA
GGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAAGCTTAAAGCA
CGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTGGAGAAGAACT
TGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGGCAGCTTGATA
TGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACATGCTGGATACC
CTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAACAAAAAAAAA
AAAAAAAAAAAAAAAAAAA
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