CK934203

Overview
NameCK934203
Unique NameCK934203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:671..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.092e-30
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLG  G   P
Sbjct:   72 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFP 118

HSP 2 Score: 61.2326 bits (147), Expect = 3.092e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:  110 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 144
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.092e-30
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRWAMLG  G   P
Sbjct:   73 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFP 119

HSP 2 Score: 61.2326 bits (147), Expect = 3.092e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:  111 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 145
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.093e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115

HSP 2 Score: 60.077 bits (144), Expect = 3.093e-30
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.093e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   68 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 114

HSP 2 Score: 60.077 bits (144), Expect = 3.093e-30
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  106 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 140
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.093e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 115

HSP 2 Score: 60.077 bits (144), Expect = 3.093e-30
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.093e-30
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115

HSP 2 Score: 63.1586 bits (152), Expect = 3.093e-30
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.093e-30
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFP 115

HSP 2 Score: 63.1586 bits (152), Expect = 3.093e-30
Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPEILSKNGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.094e-30
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   65 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 111

HSP 2 Score: 60.077 bits (144), Expect = 3.094e-30
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  103 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 137
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.865e-30
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHS WAMLG  G   P
Sbjct:   10 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFP 56

HSP 2 Score: 61.2326 bits (147), Expect = 6.865e-30
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+LS+NGVKFGEAVWFKAG+QIFSEG
Sbjct:   48 LGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEG 82
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.157e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 60.077 bits (144), Expect = 1.157e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  109 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
The following BLAST results are available for this feature:
BLAST of CK934203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB28_PEA3.092e-3087.23Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA3.092e-3087.23Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB29_MAIZE3.093e-3089.36Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB23_APIGR3.093e-3089.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ3.093e-3089.36Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB24_SOLLC3.093e-3085.11Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC3.093e-3085.11Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_ORYSJ3.094e-3089.36Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_CUCSA6.865e-3087.23Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2G_SOLLC1.157e-2987.23Chlorophyll a-b binding protein 3C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934203 ID=CK934203; Name=CK934203; organism=Citrus sinensis; type=EST; length=227bp
CATCATACTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTG
GTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTG
ATCCACAGCAGATGGGCAATGCTTGGANNNNNGGGGGGGCGTCTTCCCTG
AAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAG
GCTGGCGCTCAAATATTCTCTGAAGGT
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