CK934203

Overview
NameCK934203
Unique NameCK934203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:671..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.157e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 60.077 bits (144), Expect = 1.157e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  109 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.157e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 60.077 bits (144), Expect = 1.157e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  109 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.157e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 60.077 bits (144), Expect = 1.157e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  109 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.157e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 60.077 bits (144), Expect = 1.157e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  109 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.158e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

HSP 2 Score: 60.077 bits (144), Expect = 1.158e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.158e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   70 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116

HSP 2 Score: 60.077 bits (144), Expect = 1.158e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  108 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 142
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.158e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

HSP 2 Score: 60.077 bits (144), Expect = 1.158e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.158e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   69 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 115

HSP 2 Score: 60.077 bits (144), Expect = 1.158e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  107 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.158e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   70 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116

HSP 2 Score: 60.077 bits (144), Expect = 1.158e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  108 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 142
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.507e-29
Identity = 41/47 (87.23%), Postives = 42/47 (89.36%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLG  G   P
Sbjct:   70 LTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP 116

HSP 2 Score: 58.9214 bits (141), Expect = 1.507e-29
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFS+G
Sbjct:  108 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDG 142
The following BLAST results are available for this feature:
BLAST of CK934203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB2A_SPIOL1.157e-2987.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC1.157e-2987.23Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC1.157e-2987.23Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB24_TOBAC1.157e-2987.23Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2B_SOLLC1.158e-2987.23Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB25_NICPL1.158e-2987.23Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_TOBAC1.158e-2987.23Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_MAIZE1.158e-2987.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_TOBAC1.158e-2987.23Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB22_ARATH1.507e-2987.23Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934203 ID=CK934203; Name=CK934203; organism=Citrus sinensis; type=EST; length=227bp
CATCATACTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTG
GTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTG
ATCCACAGCAGATGGGCAATGCTTGGANNNNNGGGGGGGCGTCTTCCCTG
AAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAG
GCTGGCGCTCAAATATTCTCTGAAGGT
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