CK934203

Overview
NameCK934203
Unique NameCK934203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:671..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.640e-29
Identity = 39/47 (82.98%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTA +SADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   70 LTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFP 116

HSP 2 Score: 61.2326 bits (147), Expect = 5.640e-29
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L+KNG+KFGEAVWFKAGAQIFSEG
Sbjct:  108 LGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEG 142
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.342e-29
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 57.3806 bits (137), Expect = 7.342e-29
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFK G+QIFS+G
Sbjct:  109 LGALGCVFPELLARNGVKFGEAVWFKGGSQIFSQG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.559e-29
Identity = 40/47 (85.11%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFP DYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 59.3066 bits (142), Expect = 9.559e-29
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+ ++NG+KFGEAVWFKAGAQIFSEG
Sbjct:  109 LGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.559e-29
Identity = 40/47 (85.11%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTA LSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 60.077 bits (144), Expect = 9.559e-29
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:  109 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 9.561e-29
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXG 136
            L+GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG  G
Sbjct:   69 LSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALG 111

HSP 2 Score: 56.9954 bits (136), Expect = 9.561e-29
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G V PE+L+KNGVKFGEAVWFKAG+QIF+EG
Sbjct:  107 LGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEG 141
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.620e-28
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   71 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 117

HSP 2 Score: 56.225 bits (134), Expect = 1.620e-28
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+ ++NGVKFGEAVW KAG+QIFSEG
Sbjct:  109 LGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEG 143
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.621e-28
Identity = 41/47 (87.23%), Postives = 41/47 (87.23%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLG  G   P
Sbjct:   70 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP 116

HSP 2 Score: 56.225 bits (134), Expect = 1.621e-28
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEA WFKAG+QIFS+G
Sbjct:  108 LGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDG 142
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.841e-27
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADP TFAKNR+LEVIH RW MLG  G   P
Sbjct:   70 LTGEFPGDYGWDTAGLSADPATFAKNRKLEVIHCRWTMLGALGCVFP 116

HSP 2 Score: 56.9954 bits (136), Expect = 3.841e-27
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+ ++NGVKFGEAVWFKAG+QIF EG
Sbjct:  108 LGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEG 142
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.435e-26
Identity = 37/47 (78.72%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            L GEF GDYGWDTAGLS+DPETFA+NRELEVIH+RWAMLG  G   P
Sbjct:   72 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTP 118

HSP 2 Score: 56.225 bits (134), Expect = 1.435e-26
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G + PE+L+K+GVKFGEAVWFKAGAQIFSEG
Sbjct:  110 LGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEG 144
[Close]
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.869e-26
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 2 
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDT GLSADPETFAKNRELEVIH RWA+    G   P
Sbjct:   68 LTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFP 114

HSP 2 Score: 58.151 bits (139), Expect = 1.869e-26
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 3 
Query:  135 GGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            G VFPE+L++NGVKFGE VWFKAG+QIFSEG
Sbjct:  110 GCVFPELLARNGVKFGEGVWFKAGSQIFSEG 140
The following BLAST results are available for this feature:
BLAST of CK934203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB21_PINTH5.640e-2982.98Chlorophyll a-b binding protein type I, chloroplas... [more]
CB23_NICPL7.342e-2987.23Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB23_PETSP9.559e-2985.11Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB25_PETSP9.559e-2985.11Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB23_POLMU9.561e-2993.02Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB22_PETSP1.620e-2887.23Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_WHEAT1.621e-2887.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PETSP3.841e-2780.85Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA1.435e-2678.72Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB48_MAIZE1.869e-2678.72Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934203 ID=CK934203; Name=CK934203; organism=Citrus sinensis; type=EST; length=227bp
CATCATACTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTG
GTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTG
ATCCACAGCAGATGGGCAATGCTTGGANNNNNGGGGGGGCGTCTTCCCTG
AAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAG
GCTGGCGCTCAAATATTCTCTGAAGGT
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