CK934203

Overview
NameCK934203
Unique NameCK934203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.126e-26
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 2
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLG  G + P
Sbjct:   57 LTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTP 103          

HSP 2 Score: 53.5286 bits (127), Expect = 4.126e-26
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 3
Query:  147 PEILSKNGVKFGEAVWFKAGAQIFSEG 227
            PE+L+K+G KFGEAVWFKAGAQIFSEG
Sbjct:  103 PELLAKSGTKFGEAVWFKAGAQIFSEG 129          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.736e-24
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 2
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXG 136
            LTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LG  G
Sbjct:   59 LTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALG 101          

HSP 2 Score: 46.9802 bits (110), Expect = 4.736e-24
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 3
Query:  123 LXXXGGVFPEILSKN-GVKFGEAVWFKAGAQIFSEG 227
            L   G + PE+LS   GVKFGE VWFKAGAQIFSEG
Sbjct:   97 LGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEG 132          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.157e-24
Identity = 38/47 (80.85%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            LTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM    G   P
Sbjct:   73 LTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFP 119          

HSP 2 Score: 51.9878 bits (123), Expect = 6.157e-24
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 3
Query:  135 GGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            G +FPE+LS  G  FGEAVWFKAGAQIFSEG
Sbjct:  115 GCIFPELLSVMGQGFGEAVWFKAGAQIFSEG 145          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.891e-22
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXG 136
            LTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LG  G
Sbjct:   54 LTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALG 96          

HSP 2 Score: 43.8986 bits (102), Expect = 1.891e-22
Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 3
Query:  123 LXXXGGVFPEILSKN-GVKFGEAVWFKAGAQIFSEG 227
            L   G + PE+LS+  GV+FGE VWFKAGAQIF++G
Sbjct:   92 LGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADG 127          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.019e-21
Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = 2
Query:   11 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            +GE P     +  GLSADPETFAKNRELEVIHSRWAMLG  G   P
Sbjct:   61 SGEAPSYLTGEFHGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 106          

HSP 2 Score: 60.077 bits (144), Expect = 2.019e-21
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3
Query:  123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227
            L   G VFPE+L++NGVKFGEAVWFKAG+QIFSEG
Sbjct:   98 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 132          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.519e-19
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 2
Query:   11 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXG 136
            TGEFPGDYGWDTAGLSADPETF + RELE+IH+R  +LG  G
Sbjct:   77 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALG 118          

HSP 2 Score: 39.6614 bits (91), Expect = 8.519e-19
Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 3
Query:  123 LXXXGGVFPEILS-KNGVKFGEA-VWFKAGAQIFSEG 227
            L   G V PE+L+ ++G+KFG+A +WFKAGA IF +G
Sbjct:  114 LGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDG 150          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.437e-17
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 2
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP*NPLQEWSEV 178
            L GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLG  G   P   L++W +V
Sbjct:   67 LNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFP-EVLEKWVKV 122          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 2
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP*NPLQEW 169
            L GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG  G   P   LQ+W
Sbjct:   70 LNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFP-EVLQKW 122          
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.253e-11
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 2
Query:    8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148
            L GE  GDYG+D  GL   PE FAK +  E+IH+RWAMLG  G  +P
Sbjct:   85 LNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIP 131          

HSP 2 Score: 31.187 bits (69), Expect = 1.253e-11
Identity = 16/30 (53.33%), Postives = 18/30 (60.00%), Query Frame = 3
Query:  123 LXXXGGVFPEILSKNGVKFG-EAVWFKAGA 209
            L   G + PE L+K G   G EAVWFK GA
Sbjct:  123 LGAAGFIIPEALNKYGANCGPEAVWFKTGA 152          
The following BLAST results are available for this feature:
BLAST of CK934203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB2_CHLRE4.126e-2678.72Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO4.736e-2486.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO6.157e-2480.85Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE1.891e-2279.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_SOYBN2.019e-2167.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2_DUNSA8.519e-1976.19Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_SOLLC5.437e-1771.93Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU1.211e-1674.07Chlorophyll a-b binding protein of LHCII type III,... [more]
CB26_ARATH1.253e-1155.32Chlorophyll a-b binding protein CP26, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934203 ID=CK934203; Name=CK934203; organism=Citrus sinensis; type=EST; length=227bp
CATCATACTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGATACCGCTG
GTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGCTAGAGGTG
ATCCACAGCAGATGGGCAATGCTTGGANNNNNGGGGGGGCGTCTTCCCTG
AAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTGGTTCAAG
GCTGGCGCTCAAATATTCTCTGAAGGT
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