CK934203
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.126e-26 Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 2 Query: 8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148 LTGEFPGDYGWDTAGLSADPETF + RELE+IH+RWAMLG G + P Sbjct: 57 LTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTP 103 HSP 2 Score: 53.5286 bits (127), Expect = 4.126e-26 Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = 3 Query: 147 PEILSKNGVKFGEAVWFKAGAQIFSEG 227 PE+L+K+G KFGEAVWFKAGAQIFSEG Sbjct: 103 PELLAKSGTKFGEAVWFKAGAQIFSEG 129
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 4.736e-24 Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 2 Query: 8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXG 136 LTGEFPGDYGWDTAGLSADPETF K RELEVIH+RWA+LG G Sbjct: 59 LTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALG 101 HSP 2 Score: 46.9802 bits (110), Expect = 4.736e-24 Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 3 Query: 123 LXXXGGVFPEILSKN-GVKFGEAVWFKAGAQIFSEG 227 L G + PE+LS GVKFGE VWFKAGAQIFSEG Sbjct: 97 LGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEG 132
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.157e-24 Identity = 38/47 (80.85%), Postives = 38/47 (80.85%), Query Frame = 2 Query: 8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148 LTGEFPGDYGWDTAGLSA PETFAKNRELEVIHSR AM G P Sbjct: 73 LTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFP 119 HSP 2 Score: 51.9878 bits (123), Expect = 6.157e-24 Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 3 Query: 135 GGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227 G +FPE+LS G FGEAVWFKAGAQIFSEG Sbjct: 115 GCIFPELLSVMGQGFGEAVWFKAGAQIFSEG 145
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.891e-22 Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2 Query: 8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXG 136 LTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH+RWA+LG G Sbjct: 54 LTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALG 96 HSP 2 Score: 43.8986 bits (102), Expect = 1.891e-22 Identity = 22/36 (61.11%), Postives = 28/36 (77.78%), Query Frame = 3 Query: 123 LXXXGGVFPEILSKN-GVKFGEAVWFKAGAQIFSEG 227 L G + PE+LS+ GV+FGE VWFKAGAQIF++G Sbjct: 92 LGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADG 127
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.019e-21 Identity = 31/46 (67.39%), Postives = 33/46 (71.74%), Query Frame = 2 Query: 11 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148 +GE P + GLSADPETFAKNRELEVIHSRWAMLG G P Sbjct: 61 SGEAPSYLTGEFHGLSADPETFAKNRELEVIHSRWAMLGALGCVFP 106 HSP 2 Score: 60.077 bits (144), Expect = 2.019e-21 Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 3 Query: 123 LXXXGGVFPEILSKNGVKFGEAVWFKAGAQIFSEG 227 L G VFPE+L++NGVKFGEAVWFKAG+QIFSEG Sbjct: 98 LGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEG 132
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 8.519e-19 Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 2 Query: 11 TGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXG 136 TGEFPGDYGWDTAGLSADPETF + RELE+IH+R +LG G Sbjct: 77 TGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALG 118 HSP 2 Score: 39.6614 bits (91), Expect = 8.519e-19 Identity = 20/37 (54.05%), Postives = 28/37 (75.68%), Query Frame = 3 Query: 123 LXXXGGVFPEILS-KNGVKFGEA-VWFKAGAQIFSEG 227 L G V PE+L+ ++G+KFG+A +WFKAGA IF +G Sbjct: 114 LGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDG 150
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.437e-17 Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 2 Query: 8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP*NPLQEWSEV 178 L GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLG G P L++W +V Sbjct: 67 LNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFP-EVLEKWVKV 122
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16 Identity = 40/54 (74.07%), Postives = 42/54 (77.78%), Query Frame = 2 Query: 8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP*NPLQEW 169 L GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLG G P LQ+W Sbjct: 70 LNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFP-EVLQKW 122
BLAST of CK934203 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 1.253e-11 Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 2 Query: 8 LTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGXXGGRLP 148 L GE GDYG+D GL PE FAK + E+IH+RWAMLG G +P Sbjct: 85 LNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIP 131 HSP 2 Score: 31.187 bits (69), Expect = 1.253e-11 Identity = 16/30 (53.33%), Postives = 18/30 (60.00%), Query Frame = 3 Query: 123 LXXXGGVFPEILSKNGVKFG-EAVWFKAGA 209 L G + PE L+K G G EAVWFK GA Sbjct: 123 LGAAGFIIPEALNKYGANCGPEAVWFKTGA 152 The following BLAST results are available for this feature:
BLAST of CK934203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934203 ID=CK934203; Name=CK934203; organism=Citrus sinensis; type=EST; length=227bpback to top |