CK934214

Overview
NameCK934214
Unique NameCK934214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1665 contig Csv1_Contig1665:1..846. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: Y4AF_RHISN (Uncharacterized protein y4aF OS=Rhizobium sp. (strain NGR234) GN=NGR_a00420 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 66/236 (27.97%), Postives = 103/236 (43.64%), Query Frame = 2
Query:  155 PYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDH-VFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEP-QDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDK----FEMWGDGLQTRSFTFIDEC 844
            P +  +  RI V G  G + S I R L SE   +I +D +K + +T      +F L             K   H V   AA +GG+    +  +  +Y N ++  N++E S  SGV++  +  S+CIYP  K     +  +     P EP  + Y + K+A  +LC+ Y K +G         N+YGP   +         A  RKA  +  K      +WG G  TR F + ++C
Sbjct:    2 PMYLLDGKRIWVAGHKGMVGSAIIRSLASEDCEVIVADRQKLD-LTRQEEVEKFLL-------------KEKPHAVIMAAAKVGGILANDTMPADFIYQNLIMEANVIEGSFRSGVEKLLFLGSSCIYP--KYAAQPIREEALLTGPLEPTNEWYAIAKIAGIKLCQAYRKQYGANFISAMPTNLYGPRDKFDLNSSHVVPALIRKAHEAKIKDLGCLSIWGSGTPTRDFLYSEDC 221          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 62/233 (26.61%), Postives = 109/233 (46.78%), Query Frame = 2
Query:  170 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++ A+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  + W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   ++  ++G G QTR+F ++ + V
Sbjct:   88 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EQLTVYGSGEQTRAFQYVSDLV 307          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 63/235 (26.81%), Postives = 105/235 (44.68%), Query Frame = 2
Query:  176 LRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEH---MTEDMF------CHEFHLVDLRVMDNCLK--VTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++I +TG  GFI SH+A++L  +GHY+I  D   + +   + ED           F+ V L   D+  K  V +  + V N AA   G+ +   N    + +N +   N+LE SR   ++   YASS+ +Y       T+     SD     P   Y   K ++E +   Y+  + +     RF  +YGP+     GR         KA+ +    +++  G   R FT++D+ V
Sbjct:    1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAA-QAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQNLIYASSSSVY----GANTSKPFSTSDNID-HPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPW-----GRPDMALFKFTKAIVNDQAIDVYNHGNMMRDFTYVDDIV 224          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.610e-12
Identity = 62/233 (26.61%), Postives = 107/233 (45.92%), Query Frame = 2
Query:  170 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++ A+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y      +  V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +G       GR    + F  +AL   +   ++G G QTR+F ++ + V
Sbjct:   85 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYG-----DPEVHPQNEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGSRMHMNDGR--VVSNFILQALQG-EALTVYGSGSQTRAFQYVSDLV 304          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 72/268 (26.87%), Postives = 112/268 (41.79%), Query Frame = 2
Query:  116 TYGAYTYEELEREPYWPSEKLRIS--------VTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDM-------------FCHEFHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASR-ISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAL--TSTDKFEMWGDGLQTRSFTFIDECV 847
            TYG   +E+  R     S ++R S        VTGA GF+ +H++  LK  G  +I  D   N++    +             F  E  + D+ ++    K+     HV + AA   G+ +   N S  +++N     N+LE  + ++      +ASS+ +Y     L T V   E D    +P   Y   K A EE+   Y   +G+     RF  +YGP+G      + A   F +  L   S   FE    G   R FT+ID+ V
Sbjct:   73 TYGGPAWEKRLRS----SARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLD-NFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVS-FTHVMHLAAQ-AGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYG----LNTKVPFSEKDKTD-QPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGR----PDMAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIV 324          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 65/225 (28.89%), Postives = 100/225 (44.44%), Query Frame = 2
Query:  182 ISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT-KGVDHVFNFAADMGGMGFIQSNHSVIMYN---NTMISFNMLEASRISGVKRFFYASSA-CIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDE 841
            I VTG  GFI SHI  +L    + +I  D     +        EF   D+R  D   K+  K V+ V + AA +     +++     +Y+   N + + N+LE  R   + +  +ASS   +Y E   L  +      +  P  P   YGL K   EE  K Y + +GIE  + R+ N+YG     K G     + F  K L +     ++GDG QTR F ++ +
Sbjct:    2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNINPKAEFVNADIRDKDLDEKINFKDVEVVIHQAAQINVRNSVENP----VYDGDINVLGTINILEMMRKYDIDKIVFASSGGAVYGEPNYLPVD------ENHPINPLSPYGLSKYVGEEYIKLYNRLYGIEYAILRYSNVYGERQDPK-GEAGVISIFIDKMLKNQSPI-IFGDGNQTRDFVYVGD 214          
BLAST of CK934214 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 58/237 (24.47%), Postives = 97/237 (40.93%), Query Frame = 2
Query:  176 LRISVTGAGGFIASHIARRLKSEGHYIIASD---------WKKNEH----MTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNFAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFTFIDECV 847
            +R  +TG  GFI  H+A+RL  EGH+++  D          K+  H     +         L D   +D   ++ +    V    A   G+ +   N    +  N + S+NMLE ++    K    AS++ IY         +   E+D    EP   Y   K + E +   Y   + +     RF  +YGP+     GR          A+ +    +++G+G  +R FT+ID+ V
Sbjct:    1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLEDRAALDRAAELAE--PEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPKHLMLASTSSIY----GANEKIPFAEADR-ADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFFTVYGPW-----GRPDMALFKFVDAIHNGRPIDIYGEGRMSRDFTYIDDLV 225          
The following BLAST results are available for this feature:
BLAST of CK934214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
Y4AF_RHISN2.484e-1327.97Uncharacterized protein y4aF OS=Rhizobium sp. (str... [more]
UXS1_XENTR4.237e-1326.61UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
CAPI_STAAU7.227e-1326.81Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
UXS1_DANRE1.610e-1226.61UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
GAE4_ARATH1.044e-1126.87UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GALE_METJA2.325e-1128.89Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
LPSL_RHIME5.179e-1124.47UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934214 ID=CK934214; Name=CK934214; organism=Citrus sinensis; type=EST; length=847bp
GGGGATTCAATCTTTAATTCTTCCAAAGCCAGCCATTCTCCTCCTCCTTT
ATCTTCTCCTCTTTCATTAAACTCTCAAAGTTCAGGTGTTTTTCAGAATG
GGAAGTTCTGAAGGAACCTATGGTGCATACACCTATGAGGAGCTTGAGAG
GGAACCTTACTGGCCTTCTGAGAAGCTCCGAATTTCTGTCACTGGGGCAG
GTGGTTTTATTGCCTCCCACATTGCTCGGCGTCTGAAGAGTGAAGGCCAT
TACATTATTGCCTCTGACTGGAAGAAGAATGAGCACATGACTGAGGATAT
GTTCTGTCATGAATTCCACCTTGTTGACCTTAGGGTCATGGACAATTGCT
TGAAAGTTACTAAGGGGGTTGACCATGTGTTTAACTTTGCTGCTGATATG
GGTGGTATGGGCTTTATTCAGTCCAACCACTCTGTTATCATGTATAACAA
TACCATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAA
AGAGGTTTTTCTATGCCTCCAGTGCCTGCATCTATCCCGAATTTAAGCAG
CTGGAAACTAACGTAAGCTTGAAGGAGTCTGATGCCTGGCCCGCTGAGCC
TCAAGATGCTTATGGCTTGGAGAAGCTTGCAAGTGAGGAGTTGTGTAAGC
ACTACACGAAAGACTTTGGAATTGAGTGTCGTGTTGGAAGATTCCACAAT
ATTTATGGGCCTTTTGGAACATGGAAAGGTGGAAGGGAAAAAGCTCCTGC
TGCTTTTTGCCGAAAGGCTCTTACTTCAACTGACAAGTTTGAGATGTGGG
GAGATGGACTTCAAACTCGATCTTTCACCTTCATTGATGAATGTGTT
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