CK934216

Overview
NameCK934216
Unique NameCK934216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 2.523e-119
Identity = 206/242 (85.12%), Postives = 220/242 (90.91%), Query Frame = 1
Query:  109 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSA+P+TFA+NRELEV HC WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN
Sbjct:   13 FAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 4.304e-119
Identity = 205/239 (85.77%), Postives = 219/239 (91.63%), Query Frame = 1
Query:  115 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA+P+TFAKNRELEV H  WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSIL+IWA QV+LMGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN
Sbjct:   15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 4.304e-119
Identity = 205/225 (91.11%), Postives = 214/225 (95.11%), Query Frame = 1
Query:  163 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            GRI+MRKT  K    +SGSPWYGPDRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSA+P+TFAKNRELEV H  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNN
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 250          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 425.631 bits (1093), Expect = 1.636e-118
Identity = 206/241 (85.48%), Postives = 216/241 (89.63%), Query Frame = 1
Query:  109 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA+P+TFAKNRELEV H  WAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNP+L+HAQSILAIWACQVVLMGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 2.790e-118
Identity = 206/249 (82.73%), Postives = 222/249 (89.16%), Query Frame = 1
Query:  115 GKAVNLAPSGNELSNGG-------RISMRKTGSKSVS---SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSA+P+ FAKNRELEV HC WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIWACQV+LMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNN
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 424.861 bits (1091), Expect = 2.790e-118
Identity = 207/241 (85.89%), Postives = 218/241 (90.46%), Query Frame = 1
Query:  115 GKAVNLAPSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            GK + L PS  EL    R +MRK  T  K  SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA+P+TF+KNRELEV H  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN
Sbjct:   18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 257          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 424.091 bits (1089), Expect = 4.759e-118
Identity = 205/243 (84.36%), Postives = 222/243 (91.36%), Query Frame = 1
Query:  109 FVGKAVNLAPSGNELSNGGRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            F GKAV   PS + L    R++MRKT +K+  VSS SPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSA+P+TFAKNRELEV HC WAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNP+L+HAQS+LAIWACQVVLMGAVEGYRIAGGPLGE+ DPLYPGGSFDPLGLA+ P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNN
Sbjct:   13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 422.935 bits (1086), Expect = 1.060e-117
Identity = 209/237 (88.19%), Postives = 218/237 (91.98%), Query Frame = 1
Query:  133 APS-GNELSNGGRISMRKTGSK---SVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            APS  + L    RI+MRKT +K   + SSGSPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSA+P+TFAKNRELEV H  WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN
Sbjct:   17 APSTSSALFGEARITMRKTAAKPKPAASSGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 422.165 bits (1084), Expect = 1.808e-117
Identity = 205/225 (91.11%), Postives = 213/225 (94.67%), Query Frame = 1
Query:  163 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            GRI+MRK+ +K    +SGSPWYG DRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSA+P+TFAKNRELEV H  WAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILAIWA QVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN
Sbjct:   25 GRITMRKSAAKPKPAASGSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249          
BLAST of CK934216 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 3.085e-117
Identity = 207/243 (85.19%), Postives = 219/243 (90.12%), Query Frame = 1
Query:  115 GKAVNLA--PSGNELSNGGRISMRK--TGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSANPQTFAKNRELEVXHCIWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 831
            GK V  +  PS  EL  G R +MRK  T  K  SSGSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSA+P+TF+KNRELEV H  WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWA QV+LMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNN
Sbjct:   15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256          
The following BLAST results are available for this feature:
BLAST of CK934216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB21_SINAL2.523e-11985.12Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_APIGR4.304e-11985.77Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE4.304e-11991.11Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_HORVU1.636e-11885.48Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY2.790e-11882.73Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB22_PEA2.790e-11885.89Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_WHEAT4.759e-11884.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_ORYSJ1.060e-11788.19Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB22_ORYSJ1.808e-11791.11Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB28_PEA3.085e-11785.19Chlorophyll a-b binding protein 8, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004540_A03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10001_IF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934216 ID=CK934216; Name=CK934216; organism=Citrus sinensis; type=EST; length=831bp
GGGGAACCAACAGCTTCTCTTGCTTACACAGCTTCTATTGCTTACCCAGC
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCC
CACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACTGCCGGGCTTTCAGCTAACCCACAAACCTTTGCCAA
GAACCGTGAACTCGAAGTNNNCCACTGCATATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGAAACCCAAACTTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGATGGGAGCCGTTGAGGGTTACAGAATT
GCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAG
CTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCA
AGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGT
TTCTTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGC
CGACCACTTGGCTGACCCTGTCAATAACAAT
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