CK934222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CUSEX (DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata GN=rpoC1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13 Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIAN+LDKPLKELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANILDKPLKELEGLVYCDFSFAR 156
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13 Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKR+PSYIANLLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRIPSYIANLLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_POPTR (DNA-directed RNA polymerase subunit beta' OS=Populus trichocarpa GN=rpoC1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLK+LEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANLLDKPLKQLEGLVYCDFSFAR 156
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_POPAL (DNA-directed RNA polymerase subunit beta' OS=Populus alba GN=rpoC1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLK+LEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKQLEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PLAOC (DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13 Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPL+ELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLRELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13 Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIAN LDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_FAGEA (DNA-directed RNA polymerase subunit beta' OS=Fagopyrum esculentum subsp. ancestrale GN=rpoC1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13 Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIAN LDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDFAFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CUSRE (DNA-directed RNA polymerase subunit beta' OS=Cuscuta reflexa GN=rpoC1 PE=2 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13 Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIAN+LDKP+KELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANILDKPIKELEGLVYCDFYFAR 156
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CALFG (DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus GN=rpoC1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13 Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKE EGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKEFEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_LIRTU (DNA-directed RNA polymerase subunit beta' OS=Liriodendron tulipifera GN=rpoC1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.124e-13 Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIA+LLDKPLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIASLLDKPLKELEGLVYCDFSFAR 149 The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bpback to top |