CK934222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_NUPAD (DNA-directed RNA polymerase subunit beta' OS=Nuphar advena GN=rpoC1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12 Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANL DKPLKELEGLVYCD F R Sbjct: 118 CPVTHVWYLKRLPSYIANLSDKPLKELEGLVYCDFSFAR 156
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_AETGR (DNA-directed RNA polymerase subunit beta' OS=Aethionema grandiflora GN=rpoC1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12 Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELE LVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELESLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SILLA (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia GN=rpoC1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12 Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNFDF 154 C THVWYLKRLPSYIAN LDKPLKELEGLVYCD NF F Sbjct: 111 CPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDY---PNFSF 150
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_AMBTC (DNA-directed RNA polymerase subunit beta' OS=Amborella trichopoda GN=rpoC1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.364e-12 Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANL D+PLKELEGLVYCD F R Sbjct: 111 CPVTHVWYLKRLPSYIANLSDRPLKELEGLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_DRIGR (DNA-directed RNA polymerase subunit beta' OS=Drimys granadensis GN=rpoC1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.087e-12 Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWY KRLPSYIANLLDKPLKELE LVYCD F R Sbjct: 111 CPVTHVWYFKRLPSYIANLLDKPLKELESLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_COFAR (DNA-directed RNA polymerase subunit beta' OS=Coffea arabica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12 Identity = 34/43 (79.07%), Postives = 34/43 (79.07%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDRNFDF 154 C THVWYLKRLPSYIANLLDK LKELEGLVYCD NF F Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKSLKELEGLVYCDY---LNFSF 150
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_JASNU (DNA-directed RNA polymerase subunit beta' OS=Jasminum nudiflorum GN=rpoC1 PE=3 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 5.266e-12 Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDKPLKELEGLVY D F R Sbjct: 111 CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYRDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SOYBN (DNA-directed RNA polymerase subunit beta' OS=Glycine max GN=rpoC1 PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12 Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLKRLPSYIANLLDK LKELE LVYCD F R Sbjct: 111 CLVTHVWYLKRLPSYIANLLDKSLKELESLVYCDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PHYPA (DNA-directed RNA polymerase subunit beta' OS=Physcomitrella patens GN=rpoC1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11 Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 C THVWYLKRLPSYIANLL KPLKELE LVYCD+ Sbjct: 108 CPVTHVWYLKRLPSYIANLLAKPLKELESLVYCDL 142
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PHAVU (DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11 Identity = 32/39 (82.05%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C TH WYLKRLPSYIANLLDKPLKELE LVY DV F R Sbjct: 111 CLVTHAWYLKRLPSYIANLLDKPLKELESLVYGDVSFAR 149 The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bpback to top |