CK934222
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_MARPO (DNA-directed RNA polymerase subunit beta' OS=Marchantia polymorpha GN=rpoC1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11 Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 C THVWYLKRLPSYIANLL KPLKELE LVYCD+ Sbjct: 111 CSVTHVWYLKRLPSYIANLLAKPLKELESLVYCDL 145
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ANTFO (DNA-directed RNA polymerase subunit beta' OS=Anthoceros formosae GN=rpoC1 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11 Identity = 30/35 (85.71%), Postives = 31/35 (88.57%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 C THVWYLKRLPSYIANLL KPLKELE LVYCD+ Sbjct: 111 CPVTHVWYLKRLPSYIANLLAKPLKELESLVYCDL 145
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_WHEAT (DNA-directed RNA polymerase subunit beta' OS=Triticum aestivum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLK LPSYIANLLDKPLK+LEGLVY D F R Sbjct: 111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SORBI (DNA-directed RNA polymerase subunit beta' OS=Sorghum bicolor GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLK LPSYIANLLDKPLK+LEGLVY D F R Sbjct: 111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SACOF (DNA-directed RNA polymerase subunit beta' OS=Saccharum officinarum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLK LPSYIANLLDKPLK+LEGLVY D F R Sbjct: 111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SACHY (DNA-directed RNA polymerase subunit beta' OS=Saccharum hybrid GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLK LPSYIANLLDKPLK+LEGLVY D F R Sbjct: 111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PSINU (DNA-directed RNA polymerase subunit beta' OS=Psilotum nudum GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV 130 C THVWYLKRLPSYIANLL KPL +LE LVYCD+ Sbjct: 111 CPVTHVWYLKRLPSYIANLLAKPLNDLESLVYCDI 145
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSJ (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. japonica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLK LPSYIANLLDKPLK+LEGLVY D F R Sbjct: 111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSI (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa subsp. indica GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLK LPSYIANLLDKPLK+LEGLVY D F R Sbjct: 111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_ORYSA (DNA-directed RNA polymerase subunit beta' OS=Oryza sativa GN=rpoC1 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11 Identity = 31/39 (79.49%), Postives = 32/39 (82.05%), Query Frame = 2 Query: 26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142 C THVWYLK LPSYIANLLDKPLK+LEGLVY D F R Sbjct: 111 CPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFAR 149 The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bpback to top |