CK934222

Overview
NameCK934222
Unique NameCK934222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CUSEX (DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIAN+LDKPLKELEGLVYCD  F R
Sbjct:  118 CPVTHVWYLKRLPSYIANILDKPLKELEGLVYCDFSFAR 156          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_BUXMI (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKR+PSYIANLLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRIPSYIANLLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_POPTR (DNA-directed RNA polymerase subunit beta' OS=Populus trichocarpa GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLK+LEGLVYCD  F R
Sbjct:  118 CPVTHVWYLKRLPSYIANLLDKPLKQLEGLVYCDFSFAR 156          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_POPAL (DNA-directed RNA polymerase subunit beta' OS=Populus alba GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLK+LEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKQLEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_PLAOC (DNA-directed RNA polymerase subunit beta' OS=Platanus occidentalis GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.763e-13
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPL+ELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLRELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIAN LDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_FAGEA (DNA-directed RNA polymerase subunit beta' OS=Fagopyrum esculentum subsp. ancestrale GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIAN LDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANFLDKPLKELEGLVYCDFAFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CUSRE (DNA-directed RNA polymerase subunit beta' OS=Cuscuta reflexa GN=rpoC1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIAN+LDKP+KELEGLVYCD  F R
Sbjct:  118 CPVTHVWYLKRLPSYIANILDKPIKELEGLVYCDFYFAR 156          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_CALFG (DNA-directed RNA polymerase subunit beta' OS=Calycanthus floridus var. glaucus GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.221e-13
Identity = 33/39 (84.62%), Postives = 33/39 (84.62%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIANLLDKPLKE EGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIANLLDKPLKEFEGLVYCDFSFAR 149          
BLAST of CK934222 vs. ExPASy Swiss-Prot
Match: RPOC1_LIRTU (DNA-directed RNA polymerase subunit beta' OS=Liriodendron tulipifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.124e-13
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 2
Query:   26 CXXTHVWYLKRLPSYIANLLDKPLKELEGLVYCDV*FDR 142
            C  THVWYLKRLPSYIA+LLDKPLKELEGLVYCD  F R
Sbjct:  111 CPVTHVWYLKRLPSYIASLLDKPLKELEGLVYCDFSFAR 149          
The following BLAST results are available for this feature:
BLAST of CK934222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RPOC1_CUSEX3.647e-1384.62DNA-directed RNA polymerase subunit beta' OS=Cuscu... [more]
RPOC1_BUXMI3.647e-1384.62DNA-directed RNA polymerase subunit beta' OS=Buxus... [more]
RPOC1_POPTR4.763e-1384.62DNA-directed RNA polymerase subunit beta' OS=Popul... [more]
RPOC1_POPAL4.763e-1384.62DNA-directed RNA polymerase subunit beta' OS=Popul... [more]
RPOC1_PLAOC4.763e-1384.62DNA-directed RNA polymerase subunit beta' OS=Plata... [more]
RPOC1_SPIOL6.221e-1384.62DNA-directed RNA polymerase subunit beta' OS=Spina... [more]
RPOC1_FAGEA6.221e-1384.62DNA-directed RNA polymerase subunit beta' OS=Fagop... [more]
RPOC1_CUSRE6.221e-1382.05DNA-directed RNA polymerase subunit beta' OS=Cuscu... [more]
RPOC1_CALFG6.221e-1384.62DNA-directed RNA polymerase subunit beta' OS=Calyc... [more]
RPOC1_LIRTU8.124e-1384.62DNA-directed RNA polymerase subunit beta' OS=Lirio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_G09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934222 ID=CK934222; Name=CK934222; organism=Citrus sinensis; type=EST; length=378bp
GCGGGGGGATACATAAAACTGTGGATGCCNNNTAACCCACGTGTGGTATT
TGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAA
GAATTAGAAGGCCTAGTATATTGCGATGTGTGATTTGATCGAAATTTTGA
TTTTACAGATTCGAAATATGAAACTGTCATCCCAGGCAATCGAATTGGGA
TGCCCTGAACCTGACATGTCTCTTTGGAGGAGTCACATGAAGCTCAGACC
GATGGGTGTATTCAATACTCCCCCCAAAAACGAAAAAGGGGAATTGGTCT
ATGGGCGATTCAGTAAAAAATAAATAAGAATTTCTAGTTGTACCTCGTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top