CK934227
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 350.903 bits (899), Expect = 4.412e-96 Identity = 172/222 (77.48%), Postives = 190/222 (85.59%), Query Frame = 3 Query: 105 SSFVGKAVNLAPSGNDLSNG----GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 S+FVG+AV + + G GRI+MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSE GLDYLGNP+L+HAQSILAIWAC VVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 9 SAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 2.190e-95 Identity = 172/232 (74.14%), Postives = 194/232 (83.62%), Query Frame = 3 Query: 78 MATSTMGLSSSFVGKAVNLAPSGNDL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 MA S + ++SF+G A P ++L +GGRI+MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSE GLDYLGNP+L+HAQSILAIWA VVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFF Sbjct: 1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 226
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 348.591 bits (893), Expect = 2.190e-95 Identity = 172/232 (74.14%), Postives = 194/232 (83.62%), Query Frame = 3 Query: 78 MATSTMGLSSSFVGKAVNLAPSGNDL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 MA S + ++SF+G A P ++L +GGRI+MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+L++NGVKFGEAVWFKAGAQIFSE GLDYLGNP+L+HAQSILAIWA VVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFF Sbjct: 1 MAASALHQTTSFLGTA----PRRDELVRRVGDSGGRITMRRTVKSAPQS--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFF 226
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 348.206 bits (892), Expect = 2.860e-95 Identity = 174/233 (74.68%), Postives = 193/233 (82.83%), Query Frame = 3 Query: 78 MATSTMGLSSSFVGKAVNLAPSGNDLS------NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 MATS + S+F G+ S N+L NGGR +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSE GLDYLGNP+LIHAQSILA+WA VVLMG +EGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 1 MATSAIE-QSAFAGQTA--LKSQNELVRKIGSFNGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 8.320e-95 Identity = 175/232 (75.43%), Postives = 191/232 (82.33%), Query Frame = 3 Query: 78 MATSTMGLSSSFVGKAVNLAPSGNDL-----SNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 MAT++ SSS G+ + L P N+L + RI+MR+T + S WYGPDR KYLGPFS PSYLTGEFPGDYGWDTA +SADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NG+KFGEAVWFKAGAQIFSE GLDY GNP+LIHAQSILAIWAC VVLMG +EGYR+ GG LGE DPL PGG+FDPLGLADDPEA AELKVKEIKNGRLAMFSMFGFF Sbjct: 1 MATASAIQSSSLAGQTL-LRPQQNELVKKVGTAQARITMRRTVRSAPES--IWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFF 229
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 344.354 bits (882), Expect = 4.129e-94 Identity = 174/233 (74.68%), Postives = 191/233 (81.97%), Query Frame = 3 Query: 78 MATSTMGLSSSFVGKAVNLAPSGNDLSN------GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 MATS + S+F G+ S N+L GGR +MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSE GLDYLGNP+LIHAQSILAIWA VVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 1 MATSAIQ-QSAFAGQTA--LKSQNELVRKIGSFGGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1) HSP 1 Score: 344.354 bits (882), Expect = 4.129e-94 Identity = 164/199 (82.41%), Postives = 178/199 (89.45%), Query Frame = 3 Query: 162 GGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 GGR++MR+T + S WYG DR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGV FGEAVWFKAG+QIFSE GLDYLGNP+LIHAQSILAIWA VVLMG VEGYR+ GGPLGE D +YPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 4 GGRVTMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 200
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1) HSP 1 Score: 343.584 bits (880), Expect = 7.043e-94 Identity = 166/198 (83.84%), Postives = 179/198 (90.40%), Query Frame = 3 Query: 165 GRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 GR SMR+T K+V S WYG DR K+LGPFS + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGC+FPELL++NGV+FGEAVWFKAGAQIFSE GLDYLGNP+L+HAQSILAIWA VVLMG +EGYR+ GGPLGE DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF Sbjct: 32 GRFSMRRT-VKAVPQ-SIWYGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 227
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 338.961 bits (868), Expect = 1.735e-92 Identity = 160/169 (94.67%), Postives = 165/169 (97.63%), Query Frame = 3 Query: 252 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH WAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSE GLDYLGNPSL+HAQSILAIWAC VVLMGAVEGYRIAGGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF Sbjct: 1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 169
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 338.576 bits (867), Expect = 2.266e-92 Identity = 173/233 (74.25%), Postives = 190/233 (81.55%), Query Frame = 3 Query: 78 MATSTMGLSSSFVGKAVNLAPSGNDL----SNGG--RISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 MATS + S+F GK GN+ N G R +MR+T + S WYGPDR KYLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGC FPELL +NGVKFGEAVWFKAG+QIF+E GLDYLGNP+LIHAQSILAIWA VVLMG VEGYR+ GGPLGE DPLYPGG+FDPLGLADDP++FAELKVKE+KNGRLAMFSMFGFF Sbjct: 1 MATSAIQ-QSAFTGKTG--LRQGNEFIRKRGNFGQARFTMRRTVKSAPES--IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFF 228 The following BLAST results are available for this feature:
BLAST of CK934227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934227 ID=CK934227; Name=CK934227; organism=Citrus sinensis; type=EST; length=761bpback to top |