CK934227
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.814e-23 Identity = 57/82 (69.51%), Postives = 63/82 (76.83%), Query Frame = 3 Query: 522 SLIHAQSILAIWACLVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 758 +LIHA+S+LAI A V+LMGAVEGYR A G GE D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM M GF+ Sbjct: 4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFY 85
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18 Identity = 71/165 (43.03%), Postives = 86/165 (52.12%), Query Frame = 3 Query: 267 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 752 PP YLTGE GD G+D AGL+ADP TF + + EV HCR +ML +GC+ PELL G WF QI+ D +D+ + A+ A VV +E +R GG L E D YPG FDPL L + K EIKNGRLAM MFG Sbjct: 380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIW--DKVDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFG 512 HSP 2 Score: 88.9669 bits (219), Expect = 3.127e-17 Identity = 62/168 (36.90%), Postives = 85/168 (50.60%), Query Frame = 3 Query: 258 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 752 + EPP+ LTGE+P D G+D L+ADP+ +A+ R EV H R AML +GC+ PELL G+ WF+AG + DG L + + + E +R GG GE+ D YPG FDPL L D + E+KNGRLA+ ++ G Sbjct: 193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSV---DG---------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAG 327 HSP 3 Score: 81.2629 bits (199), Expect = 6.520e-15 Identity = 59/164 (35.98%), Postives = 83/164 (50.61%), Query Frame = 3 Query: 270 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 PS+L GE+ GD G+D AGL+ADP+TF + R EV H R AML +G + P+ L G+ +W++A AQ+ + + A + +A G + E +DP +YPG FDPL L D K EIKNGRLA+ ++ GF Sbjct: 12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEA--------------------AQNAGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGF 140
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.457e-16 Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 3 Query: 270 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACL-----VVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 P YLTG PGD G+D GL+ DPE + E+++ RWAMLG G + PE+ G+ W+ AG + + + + +L + IL+ + + + G+V ++ P GEV YPGG F+PL A EA K KEI NGRLAM + GF Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGF 218
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16 Identity = 88/274 (32.12%), Postives = 112/274 (40.88%), Query Frame = 3 Query: 81 ATSTMGLSSSFVGKAVNLAPSGNDLSNGGRISM--RKTG---SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 ATST +SS +G V S N R +K +K+V S P + P + P YL G GDYG+D GL E AKN RE E+IH RWAML LG + E L GV W AG ++ DG YLG P +++ I V+++G +E R A + LYPGG F DPLGLA DP A+L++ EIK+ RLAM GF Sbjct: 3 ATSTAAAASSIMGTRVVSDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAG-KVELVDGSSYLGQPLPFSISTLIWIE---VLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGF 253
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.006e-15 Identity = 61/166 (36.75%), Postives = 82/166 (49.40%), Query Frame = 3 Query: 270 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 P YLTG GD G+D GL+ DPE + E+++ RWAMLG G + PE+ + G+ W+ AG Q F+ ++ L H I W + G+V ++ P GEV YPGG F+PL A EA K KE+ NGRLAM + GF Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQD-IKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGF 219
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.716e-15 Identity = 76/236 (32.20%), Postives = 102/236 (43.22%), Query Frame = 3 Query: 180 RKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 +K+ K+V++ P + P + P +L G GDYG+D GL E AKN RE E+IH RWAML LG + E L GV W AG ++ DG YLG P +++ I V+++G +E R A + LYPGG F DPLGLA DPE A+L++ EIK+ RLAM + GF Sbjct: 44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAG-KVELVDGSSYLGQPLPFSISTLIWIE---VLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGF 256
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.822e-15 Identity = 57/165 (34.55%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 264 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGE--VTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFG 752 +PP++LTGE+P D G+D ++ADP +A+ R EV H R +ML +G + PELL G+ WF+ G + DG + + L+ + E +R GG + D YPG FDPL L D +EIKNGRLAM + G Sbjct: 167 QPPAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELL-------GKGAWFEVGNSV---DG---------------IKLGFILMAIAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTD------YTKREIKNGRLAMTGLLG 298
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.226e-14 Identity = 78/256 (30.47%), Postives = 103/256 (40.23%), Query Frame = 3 Query: 96 GLSSSFV-----GKAVNLAPSGNDLSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFF 758 GLSSSF+ +A+ AP + GG + ++ + ++ W R G + P +L G PGDYG+D GL DP RE E+IH RWAM LG G + WF+AGA +P I S + ++LMG VE R P + + YPGG FDPL LA D E LKV EIK+ RLAM +M F+ Sbjct: 11 GLSSSFLTGGNKSQALLAAPLAARV--GGAATPKRFTVLAAAAKKSWIPAVR----GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFY 241
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.519e-14 Identity = 69/209 (33.01%), Postives = 88/209 (42.11%), Query Frame = 3 Query: 267 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGF 755 PP +L G GD G+D GL E AKN RE E+IH RWAMLG LG + E L G+ W AG ++ +G YLG P +++ I V+++G +E R DP +YPGG FDPLGLA DPE LK+ EIK+ RLAM + F Sbjct: 65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAG-KVELVEGSSYLGQPLPFSLTTLIWIE---VLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIF 256
BLAST of CK934227 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 75.485 bits (184), Expect = 3.578e-13 Identity = 81/243 (33.33%), Postives = 96/243 (39.51%), Query Frame = 3 Query: 186 TGSKSVSSGSPWYGPDRVKYLGPFSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEDGLDYLGNPSLIHAQSILAIWACLVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNGRLAMFSMFGF 755 T + S+G+ G KY G P P +L G PGD G+D GLS E AKN RE E+IH RWAML LG + E A GV W +AG DG Y G L SI + V+L+G E YR T+P YPGG FDPL LA +D E LK EIK+ RLAM S FG+ Sbjct: 28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGK--VELDGASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGY 252 The following BLAST results are available for this feature:
BLAST of CK934227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934227 ID=CK934227; Name=CK934227; organism=Citrus sinensis; type=EST; length=761bpback to top |