CK934230 | Citrus Genome Database

Overview


Name	CK934230
Unique Name	CK934230
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	824

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK934230_ssr125	microsatellite	CK934230_ssr125:125..136.	BLAST: Citrus ESTs to Prunus persica proteins V1
CK934230_ssr42	microsatellite	CK934230_ssr42:42..56.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4990	contig	Csv1_Contig4990:47..870.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.620e-41
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = 2

Query:  149 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQAT-LFDLILAANYLNIKSLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            S KI LKSSDG++FE+DE VA +S  I HM+ED CA + IPL NVTSKIL  VI+YC+KHV++ +         ++DLK WD DF+K  + T LFD+++AANYLNI+SLLDLTC+TV     AD++ GKTP+EIR  FNI+NDLT          NQWAF+
Sbjct:    2 STKIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKSKE---------EEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.755e-40
Identity = 90/166 (54.22%), Postives = 111/166 (66.87%), Query Frame = 2

Query:  146 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRA----TSGVDDDLK----AWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLT-PXXXXXXXXXNQWAFE 613
            +S KI L SSDGE+F+V+E VA + Q +KH++EDDC  N IPL NVT  ILS V+EYCKKHV+    DD +        DD+ K    AWD +F+K +D  T+F LILAANYLN++ LL LTCQTVAD IK KTPEE+R+ FNI+ND T           N WAFE
Sbjct:    2 SSNKIVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

[Close]

BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.911e-40
Identity = 88/159 (55.35%), Postives = 107/159 (67.30%), Query Frame = 2

Query:  158 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWAFE 613
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKND T          NQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162

The following BLAST results are available for this feature:

BLAST of CK934230 vs. ExPASy Swiss-Prot

BLAST of CK934230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34


Match Name	E-value	Identity	Description
ASK5_ARATH	4.620e-41	55.28	SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK...	[more]
ASK15_ARATH	1.755e-40	54.22	SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS...	[more]
SKP1_XENLA	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Xenopus lae...	[more]
SKP1_RAT	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Rattus norv...	[more]
SKP1_PONAB	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Pongo abeli...	[more]
SKP1_MOUSE	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Mus musculu...	[more]
SKP1_MACFA	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Macaca fasc...	[more]
SKP1_HUMAN	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Homo sapien...	[more]
SKP1_CHICK	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Gallus gall...	[more]
SKP1_CAVPO	3.911e-40	55.35	S-phase kinase-associated protein 1 OS=Cavia porce...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004261_F08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_F08 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934230 ID=CK934230; Name=CK934230; organism=Citrus sinensis; type=EST; length=824bp
GGGGGTCCGTTCCGAGAACAGACACCTTTTCGAAGGGCTTTTCTTCTCTT
CTCTTCATCTTTATCCTCCTTTTATATATAAATATAATAAATATCAAGAA
AGTTAGGGTTTCAAGAGTGTGTTGGATCGATCGATCAGAATGTCAACGAG
TAAGAAAATCACGCTGAAGAGCTCGGATGGAGAGGCGTTCGAGGTCGATG
AAGCAGTGGCGTTGGAATCGCAGACGATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACGTCGAGGCATCTAAGTCCGACG
ATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGAT
TTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAAA
CTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCAG
ACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAATATC
AAGAACGACCTTACCCCAGAAGAGGAGGAAGAGGTTCGTCGGGAGAATCA
GTGGGCTTTTGAGTGAAAGGATCTCAAATGACCAATTTGTAATTGTGTCT
TTTCTTTTTTGTTTTGCCTTCTTTTTGTTGTTGCTGCTGACTCAAATGTC
TTTAGCTGGTAAAAGCATCAAACCATTATTGTTTTAATGTCATATCACCC
CAACCTTCTCTGTATCATTAATTGTGAAGTCCTTTTGGATCTAACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA