CK934230

Overview
NameCK934230
Unique NameCK934230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934230_ssr125 microsatellite CK934230_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934230_ssr42 microsatellite CK934230_ssr42:42..56. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4990 contig Csv1_Contig4990:47..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.105e-26
Identity = 71/189 (37.57%), Postives = 102/189 (53.97%), Query Frame = 2
Query:  149 SKKITLKSSDGEAFEVDEAVALESQTIKHMI---------------------------------EDDCADNGI--PLPNVTSKILSKVIEYCKKHVEASKSD-DRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLTPXXXXXXXXXNQWA 607
            +  + L S +GE F VD+ +A  S  +K+ +                                 +DD  D+ I  P+PNV S +L KVIE+ + H +++  D D   S     + +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI ND TP         N+WA
Sbjct:    3 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.493e-23
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = 2
Query:  227 IKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLT 484
            IK M EDDCADNGIPLPNVTSKIL  VIEYCKKHV  SK         ++DLK WD +F+ K++Q+ LFD+++AANYLNI+SLLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVVESK---------EEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 47/141 (33.33%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADN---GIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLT 565
            I L+++DG   +V++ VA+    I + +I+     +    I LP  V   +LS + +YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +DLT
Sbjct:   18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFHQVPGRSNK--------ERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150          
BLAST of CK934230 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 45/141 (31.91%), Postives = 81/141 (57.45%), Query Frame = 2
Query:  158 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCA---DNGIPLPN-VTSKILSKVIEYCKKHVEASKSDDRATSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDLT 565
            I L+++DG   +V++ VA+    I + +I+       ++ I LP  V   + S +++YC+ H    +S+         + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +DLT
Sbjct:   18 IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCRFHQLPGRSNK--------ERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLT 150          
The following BLAST results are available for this feature:
BLAST of CK934230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_YEAST1.105e-2637.57Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK6_ARATH1.493e-2365.52SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH2.022e-1233.33SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH1.712e-1131.91SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_F08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934230 ID=CK934230; Name=CK934230; organism=Citrus sinensis; type=EST; length=824bp
GGGGGTCCGTTCCGAGAACAGACACCTTTTCGAAGGGCTTTTCTTCTCTT
CTCTTCATCTTTATCCTCCTTTTATATATAAATATAATAAATATCAAGAA
AGTTAGGGTTTCAAGAGTGTGTTGGATCGATCGATCAGAATGTCAACGAG
TAAGAAAATCACGCTGAAGAGCTCGGATGGAGAGGCGTTCGAGGTCGATG
AAGCAGTGGCGTTGGAATCGCAGACGATCAAGCATATGATTGAGGACGAT
TGCGCCGACAACGGAATCCCTTTGCCTAACGTTACCAGTAAGATCCTCTC
TAAGGTCATCGAGTACTGCAAGAAGCACGTCGAGGCATCTAAGTCCGACG
ATCGGGCCACTAGCGGCGTCGATGATGATCTCAAGGCTTGGGATACCGAT
TTCGTCAAAGTCGATCAGGCCACTCTCTTTGATCTTATTCTTGCGGCAAA
CTACCTGAACATCAAGAGCTTGCTGGACTTAACTTGCCAGACTGTTGCAG
ACATGATTAAGGGAAAGACTCCAGAGGAGATCCGCAAGACATTCAATATC
AAGAACGACCTTACCCCAGAAGAGGAGGAAGAGGTTCGTCGGGAGAATCA
GTGGGCTTTTGAGTGAAAGGATCTCAAATGACCAATTTGTAATTGTGTCT
TTTCTTTTTTGTTTTGCCTTCTTTTTGTTGTTGCTGCTGACTCAAATGTC
TTTAGCTGGTAAAAGCATCAAACCATTATTGTTTTAATGTCATATCACCC
CAACCTTCTCTGTATCATTAATTGTGAAGTCCTTTTGGATCTAACAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
back to top