CK934232

Overview
NameCK934232
Unique NameCK934232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934232_ssr145 microsatellite CK934232_ssr145:145..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9795 contig Csv1_Contig9795:39..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.543e-26
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 1
Query:  523 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDG 837
            +DLP   DWR++GAV  VK+QG CGSCW+FS   A+EG + + TG+L+SLSEQQLVDC          + + GC GG MN AF++I+  GG+  E+ YPY G DG
Sbjct:    1 DDLPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT---------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDG 96          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.031e-25
Identity = 69/197 (35.03%), Postives = 96/197 (48.73%), Query Frame = 1
Query:  286 FKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLL----DPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSK 864
            FK   ++TY +  E   RF +F+  LR+     +     + T    + KFSD+T  EFR   L  N   R   +  +   L     P   DWR  G V  V++QG CGSCW+ S   A+E    + +G  V LS QQLVDC        +   + GCNGG   + FEY+ K  G+E + DYPY+G +      DKS+
Sbjct:   26 FKKTHARTYKSLREEKLRFNIFQDTLRQIAEHNVKYENGESTYYLAINKFSDITDEEFR-DMLMKNEASRPNLEGLEVADLTVGAAPESIDWRSKGVVLPVRNQGECGSCWALSTAAAIESQSAIKSGSKVPLSPQQLVDC-------STSYGNHGCNGGFAVNGFEYV-KDNGLESDADYPYSGKEDKCKANDKSR 213          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATL2_PARTE (Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT00022898001 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.031e-25
Identity = 76/196 (38.78%), Postives = 105/196 (53.57%), Query Frame = 1
Query:  277 FSLFKSKFSKTYATQEEHDYRFRVFKANLR--RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQ-KAPILPTNDLPTDFDWRDHGAVT--GVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCK 849
            ++ +K K+++ Y +Q +  YRF+VF  NL   RA +      T    + +F+D++  EF   +L L    R+P  A+  A          + DW D+  V    VK+QG+CGSCW+FSA GALE    +   +   LSEQ LVDC    D E       GCNGG M+SAFEY+    G+   KDYPYT  D G+CK
Sbjct:   26 YANWKMKYNRRYTSQRDEMYRFKVFSDNLNYIRAFQDSTESATYTLELNQFADMSQQEFASTYLSL----RVPKTAKLNASNANFQYKGAEVDWTDNKKVKYPAVKNQGSCGSCWAFSAVGALEINTDIELNKKYELSEQDLVDCSGPYDNE-------GCNGGWMDSAFEYVAD-NGLAEAKDYPYTAKD-GTCK 208          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: PAPA2_CARPA (Chymopapain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.758e-25
Identity = 70/199 (35.18%), Postives = 100/199 (50.25%), Query Frame = 1
Query:  244 SEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPA---DAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPY 822
            S+D L + E    LF S   K +K Y + +E  YRF +F+ NL         + +   G+  F+DL+  EF+++++G            D +        + P   DWR  GAVT VK+QGACGSCW+FS    +EG + + TG L+ LSEQ+LVDCD             GC GG   ++ +Y+    GV   K YPY
Sbjct:   34 SQDDLTSIERLIQLFDSWMLKHNKIYESIDEKIYRFEIFRDNLMYIDETNKKNNSYWLGLNGFADLSNDEFKKKYVGFVAEDFTGLEHFDNEDFTYKHVTNYPQSIDWRAKGAVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH---------SYGCKGGYQTTSLQYVAN-NGVHTSKVYPY 222          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATV_GVCP (Viral cathepsin OS=Cydia pomonella granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.758e-25
Identity = 69/202 (34.16%), Postives = 103/202 (50.99%), Query Frame = 1
Query:  256 LLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADA---QKAPILPTND-----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDG 837
            L N++  F  F  K++KTY + EE   +   FK NL+    + +    AV  + ++SDL  +   R+  G    L+    A    +  ++   D     LP   DWRD   VT VK+Q  CGSCW+FS    +E  + +   + ++LSEQ LV+CD         + ++GC GGLM+ A E IL+ GGV   ++ PY G DG
Sbjct:   25 LNNSDELFKNFAIKYNKTYVSDEERAIKLENFKNNLKMINEKNMASKYAVFDINEYSDLNKNALLRRTTGFRLGLKKNPSAFTMTECSVVVIKDEPQALLPETLDWRDKHGVTPVKNQMECGSCWAFSTIANIESLYNIKYDKALNLSEQHLVNCD---------NINNGCAGGLMHWALESILQEGGVVSAENEPYYGFDG 217          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.296e-25
Identity = 78/224 (34.82%), Postives = 115/224 (51.34%), Query Frame = 1
Query:  229 SDGEQSEDHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPA-----DAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            + G  + D  L+AE  +  +K+K++K+Y+  EE + +  V++ NL+  +     +    +G T     F+D T  EFR+    +     +PA      AQK   +    LP   DWR  G VT V++QG CGSCW+F+A GA+EG  F  TG L  LS Q L+DC            ++GC  G  + AF Y+LK  G+E E  YPY G D G C++     +A
Sbjct:   15 ASGAPARDPNLDAE--WQDWKTKYAKSYSPVEE-ELKRAVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDI----LIPAAVTNPSAQKQVSI---GLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDC-------SKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKD-GPCRYHSENASA 220          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.999e-25
Identity = 69/201 (34.33%), Postives = 108/201 (53.73%), Query Frame = 1
Query:  286 FKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDP----TAVHGVTKFSDLTPSEFRRQFLGLNRRLR------LPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDK 858
            +K  ++K Y   ++  +R  +++ N++  +   L       T   G+ +F+D+T  EF+ ++L    R        +P +A    +      P   DWR+ G VT VKDQG CGSCW+FS TG +EG +  +    +S SEQQLVDC            ++GC+GGLM +A++Y LK  G+E E  YPYT  + G C+++K
Sbjct:   24 WKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASDILSHGVPYEANNRAV------PDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWG-------NNGCSGGLMENAYQY-LKQFGLETESSYPYTAVE-GQCRYNK 208          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.999e-25
Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 1
Query:  529 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            +P   DW   G VT VK+QG CGSCW+FSATGALEG  F  TG+LVSLSEQ LVD             + GCNGGLM++AF+YI + GG++ E+ YPY  TD  SC +     AA
Sbjct:    1 VPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDSSRP-------QGNQGCNGGLMDNAFQYIKENGGLDSEESYPYEATD-TSCNYKPEYSAA 107          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.917e-25
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query:  529 LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCK 849
            LP+  DWR  GAV  +K+Q  CGSCW+FSA  A+E  + + TG+L+SLSEQ+LVDCD         +   GCNGG MN+AF+YI+  GG++ +++YPY+    GSCK
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD---------TASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQ-GSCK 97          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: PAPA1_CARPA (Papain OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.488e-24
Identity = 72/215 (33.49%), Postives = 104/215 (48.37%), Query Frame = 1
Query:  244 SEDHLLNAEHHFSLFKS---KFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND--LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            S++ L + E    LF+S   K +K Y   +E  YRF +FK NL+        + +   G+  F+D++  EF+ ++ G         +     +L   D  +P   DWR  GAVT VK+QG+CGSCW+FSA   +EG   + TG L   SEQ+L+DCD             GCNGG   SA + + +  G+     YPY G        +K   AA
Sbjct:   34 SQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR---------SYGCNGGYPWSALQLVAQY-GIHYRNTYPYEGVQRYCRSREKGPYAA 238          
The following BLAST results are available for this feature:
BLAST of CK934232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CPGP2_ZINOF3.543e-2651.43Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATLL_PHACE1.031e-2535.03Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
CATL2_PARTE1.031e-2538.78Cathepsin L 2 OS=Paramecium tetraurelia GN=GSPATT0... [more]
PAPA2_CARPA1.758e-2535.18Chymopapain OS=Carica papaya PE=1 SV=2[more]
CATV_GVCP1.758e-2534.16Viral cathepsin OS=Cydia pomonella granulosis viru... [more]
CATJ_RAT2.296e-2534.82Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CATLL_FASHE2.999e-2534.33Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CATL1_SHEEP2.999e-2552.17Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
ERVB_TABDI3.917e-2549.53Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
PAPA1_CARPA1.488e-2433.49Papain OS=Carica papaya PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934232 ID=CK934232; Name=CK934232; organism=Citrus sinensis; type=EST; length=878bp
GGGGGAGAAATTAGGTGTCGAAATCTCATACGCGGACCCAACCACAAGTT
TCTTCTGTCTTTTTGGAAACATTTATTATCTGCTTCATCCTGCTTTGCAG
TCCACTGGAACAAATCGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTC
CTCCTCCTCCTATCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGA
CGATGCTATGATCAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAG
ATCATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTC
TCCAAGACTTACGCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTT
CAAGGCTAATCTGCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTG
CTGTCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGC
CGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCA
AAAGGCTCCTATTCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGC
GTGATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCG
TGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATC
GACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATC
ACGAGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGT
GGGCTAATGAACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGA
GCGAGAGAAGGACTACCCTTACACTGGGACCGACGGTGGTTCCTGCAAAT
TTGACAAAAGCAAAATTGCTGCAGCTGT
back to top