CK934232

Overview
NameCK934232
Unique NameCK934232
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934232_ssr145 microsatellite CK934232_ssr145:145..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9795 contig Csv1_Contig9795:39..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CYSP_THEPA (Cysteine proteinase OS=Theileria parva GN=TP03_0285 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.666e-23
Identity = 78/239 (32.64%), Postives = 108/239 (45.19%), Query Frame = 1
Query:  232 DGEQSEDHLLNAE--HHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQF--------------------------LGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSK 864
            DG  S+D  L  E    F  F SK+++ +ATQ+E   R   F++N    K ++  +P  V G+ +FSDLT  EF + F                            L + L    D   A +   N      DWR   +VT VKDQ  CG CW+FS  G++EG +     +   LS Q+L+DCD         S  +GC GGL+ SA+EY+ K G V   KD P+       C   K+K
Sbjct:  108 DGFLSDDPKLEYEVYREFEEFNSKYNRRHATQQERLNRLVTFRSNYLEVKEQKGDEPY-VKGINRFSDLTEREFYKLFPVMKPPKATYSNGYYLLSHMANKTYLKNLKKALNTDEDVDLAKLTGEN-----LDWRRSSSVTSVKDQSNCGGCWAFSTVGSVEGYYMSHFDKSYELSVQELLDCD---------SFSNGCQGGLLESAYEYVRKYGLVS-AKDLPFV-DKARRCSVPKAK 329          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATK_RAT (Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.666e-23
Identity = 70/207 (33.82%), Postives = 105/207 (50.72%), Query Frame = 1
Query:  277 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND----LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            + L+K    K Y ++ +   R  +++ NL++     L      H     +    D+T  E  ++  GL      P+ +     L T +    +P   D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E         + GC GG M +AF+Y+ + GG++ E  YPY G D  SC ++ +  AA
Sbjct:   26 WELWKKTHGKQYNSKVDEISRRLIWEKNLKKISVHNLEASLGAHTYELAMNHLGDMTSEEVVQKMTGLRVP---PSRSFSNDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVSE---------NYGCGGGYMTTAFQYVQQNGGIDSEDAYPYVGQD-ESCMYNATAKAA 219          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATK_HUMAN (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.666e-23
Identity = 73/213 (34.27%), Postives = 103/213 (48.36%), Query Frame = 1
Query:  274 HFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVH----GVTKFSDLTPSEFRRQFLGL---------NRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            H+ L+K    K Y  + +   R  +++ NL+      L     VH     +    D+T  E  ++  GL         N  L +P    +AP           D+R  G VT VK+QG CGSCW+FS+ GALEG     TG+L++LS Q LVDC  E D         GC GG M +AF+Y+ K  G++ E  YPY G +  SC ++ +  AA
Sbjct:   25 HWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPEWEGRAP--------DSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQE-ESCMYNPTGKAA 219          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.253e-23
Identity = 75/213 (35.21%), Postives = 109/213 (51.17%), Query Frame = 1
Query:  250 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLN-RRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            D +L+ E  +  +K K+ K Y+ +EE   R  V++ N+++ K     +    HG T     F D+T  EFR+  + +    ++     QK   L  N LP   +W+  G VT V+ QG C SCW+FS TGA+EG  F  TG+L+ LS Q LVDC     P+ +     GC  G    A  Y+++ GG+E E  YPY   D GSC++      A
Sbjct:   22 DPILDVE--WQKWKIKYGKAYSLEEEGQKR-AVWEDNMKKIKLHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEIPVPTVKKGKSVQKR--LSVN-LPKFINWKKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSR---PQGNW----GCYLGNTYLALHYVMENGGLESEATYPYEEKD-GSCRYSPENSTA 220          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.067e-22
Identity = 73/204 (35.78%), Postives = 98/204 (48.04%), Query Frame = 1
Query:  286 FKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNR----RLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            +++K  K Y   EE   R  V++ N +  +          H  T     F DLT +EF +   G  R    R+ +  D Q   +      P   DWR  G VT VK+QG C S W+FSATG+LEG  F  TG LV LSEQ L+DC          +    C+GG M +AF+Y+   GG+  E+ YPY G  G  C++     AA
Sbjct:   32 WRTKHGKAYNVNEER-LRRAVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLYV------PKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDC-------MGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPYIG-PGRKCRYHAENSAA 220          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.393e-22
Identity = 72/203 (35.47%), Postives = 97/203 (47.78%), Query Frame = 1
Query:  286 FKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND---LPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAA 873
            +++K  KTY   EE   R  V++ N +  +          H  T     F DLT  EF +   G  R+       +K  I   +    +P   DWR  G VT VK+QG C S W+FSATG+LEG  F  T  L+ LSEQ L+DC          +   GC+GG M  AF+Y+   GG+  E+ YPY G  G  C++     AA
Sbjct:   32 WRTKHGKTYNMNEERLKR-AVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQ-----KIKKTHIFQDHQFLYVPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDC-------MGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRG-QGRECRYHAENSAA 220          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.104e-22
Identity = 67/197 (34.01%), Postives = 101/197 (51.27%), Query Frame = 1
Query:  259 LNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLD-PTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTND-----LPTDFDWRD-HGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTG 828
            L  +  F+LF+ +++++Y+  EE+  R  +F  NL +A++ +  D  TA  GVT FSDLT  EF R    L    R+  +A K      ++     +P   DWR   G ++ VK Q +C  CW+ +A G +E    +   + V LS Q+L+DC         G C  GC GG +  AF  +L   G+  EKDYP+ G
Sbjct:   36 LELKQAFTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGR----LYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDC---------GRCGDGCRGGFVWDAFITVLNNSGLASEKDYPFQG 219          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.053e-22
Identity = 65/191 (34.03%), Postives = 95/191 (49.74%), Query Frame = 1
Query:  277 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCK 849
            F  + +  +K +A + E+ YRF VF  N      ++ ++  A   +  F+D+T  EF +  LG+   +       KA +      P   DWR    +   KDQG CGSCW+F  T  LEG      G+L S SEQQLVDCD         + D+GC GG  +++ ++I +  G+  E DYPY     G+CK
Sbjct:   18 FKQWAATHNKVFANRAEYLYRFAVFLDN------KKFVEANANTELNVFADMTHEEFIQTHLGMTYEVPETTSNVKAAVKAA---PESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDLGKLYSFSEQQLVDCD---------ASDNGCEGGHPSNSLKFIQENNGLGLESDYPYKAV-AGTCK 187          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.030e-22
Identity = 49/111 (44.14%), Postives = 64/111 (57.66%), Query Frame = 1
Query:  532 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSK 864
            P   DWRD GAVT VK+Q  CGSCW+FS    +EG + + TG+L+SLSEQ+L+DCD             GC GG    + +Y+   GGV  EK+YPY     G C+  + K
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR---------SHGCKGGYQTGSIQYVADNGGVHTEKEYPYEKKQ-GKCRAKEKK 102          
BLAST of CK934232 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.030e-22
Identity = 72/210 (34.29%), Postives = 107/210 (50.95%), Query Frame = 1
Query:  250 DHLLNAEHHFSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVT----KFSDLTPSEFRRQFLGLN----RRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD 855
            D  L+AE  +  +K K++K+Y+ +EE   R  V++  L+  K     +    +G T    +F D T  EFR+  + ++    R  +     +   ILP        DWR  G VT V+ QG C +CW+F+ TGA+E      TG+L  LS Q LVDC            ++GC GG   +AF+Y+L  GG+E E  YPY G D G C+++
Sbjct:   22 DSSLDAE--WQDWKIKYNKSYSLKEEKLKRV-VWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSILPKF-----VDWRKKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDC-------SKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYPYEGKD-GPCRYN 215          
The following BLAST results are available for this feature:
BLAST of CK934232 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
CYSP_THEPA3.666e-2332.64Cysteine proteinase OS=Theileria parva GN=TP03_028... [more]
CATK_RAT3.666e-2333.82Cathepsin K OS=Rattus norvegicus GN=Ctsk PE=2 SV=1[more]
CATK_HUMAN3.666e-2334.27Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
CATM_MOUSE6.253e-2335.21Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
TEST2_MOUSE1.067e-2235.78Testin-2 OS=Mus musculus PE=2 SV=1[more]
TEST2_RAT1.393e-2235.47Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATW_FELCA3.104e-2234.01Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
ACP1_ENTHI4.053e-2234.03Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
MEX2_JACME9.030e-2244.14Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATR_MOUSE9.030e-2234.29Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934232 ID=CK934232; Name=CK934232; organism=Citrus sinensis; type=EST; length=878bp
GGGGGAGAAATTAGGTGTCGAAATCTCATACGCGGACCCAACCACAAGTT
TCTTCTGTCTTTTTGGAAACATTTATTATCTGCTTCATCCTGCTTTGCAG
TCCACTGGAACAAATCGAAAATGGAGCGCCTTATTCTCTCCTCTCTCCTC
CTCCTCCTCCTATCTTCTGTGCTTGCGTCCGCTGTAGCTGTCAACGACGA
CGATGCTATGATCAGACAGGTCGTGCCGTCAGACGGCGAACAATCCGAAG
ATCATCTCCTGAACGCGGAGCACCACTTCTCCCTCTTCAAGTCCAAATTC
TCCAAGACTTACGCCACCCAGGAGGAGCACGATTACCGATTCCGCGTGTT
CAAGGCTAATCTGCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTG
CTGTCCACGGTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGC
CGTCAGTTCCTTGGCTTGAATAGGCGGCTTCGGCTGCCAGCTGACGCTCA
AAAGGCTCCTATTCTCCCCACCAACGATCTTCCTACTGACTTTGACTGGC
GTGATCACGGCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCG
TGCTGGTCGTTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATC
GACGGGCGAGCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATC
ACGAGTGTGATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGT
GGGCTAATGAACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGA
GCGAGAGAAGGACTACCCTTACACTGGGACCGACGGTGGTTCCTGCAAAT
TTGACAAAAGCAAAATTGCTGCAGCTGT
back to top