CK934252

Overview
NameCK934252
Unique NameCK934252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10723 contig Csv1_Contig10723:176..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934252 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.731e-17
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   61 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 291
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          

HSP 2 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 45/76 (59.21%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  292 MIKVKTLTGKXXXXXXXXXXXXXXXXXXXXXXXGIPPVQQRLIYAGKQLADDKTARDYYIEGGSVLHLVLALRGGS 519
            +IKVKTLTGK                       GIPP QQRLIYAGKQ+ADDK A  Y++EGGSVLHLVLALRGGS
Sbjct:    2 LIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
BLAST of CK934252 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   61 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 288
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CK934252 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   61 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 288
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of CK934252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBL1_SCHPO3.731e-1751.95Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.200e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
ANUB1_HUMAN5.219e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_E05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934252 ID=CK934252; Name=CK934252; organism=Citrus sinensis; type=EST; length=725bp
GGGGAAAGCTTTTTCGTTTTTCTTTTTCAAATCGAAGAGAAAGGAAAAAG
CAATCCTAATATGCAGATCTTTGTGAAGACTTTGACTGGGAAGACGATTA
CTCTCGAGGTTGAGAGCAGTGACACCATCGATAATGTTAAGGCTAAGATT
CAGGACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGG
TAAACAATTGGAAGATGGCAGAACGCTTGCAGATTATAACATTCAAAAGG
AGTCGACGCTTCACTTGGTCCTGAGGCTCAGGGGAGGAACTATGATCAAG
GTGAAGACTCTCACAGGAAAGGAAATTGAAATTGATATTGAGCCAACTGA
TACCATCGAAAGGATCAAGGAAAGAGTGGAGGAAAAAGAAGGAATTCCTC
CAGTGCAGCAAAGGCTTATTTATGCTGGTAAGCAGCTTGCAGATGACAAG
ACAGCTCGCGACTACTACATTGAGGGTGGCTCCGTGCTTCATCTTGTTCT
TGCGCTGAGGGGTGGCAGTCTTTAAATGCATCTTTTCATATGAAGAGAAT
TCTACCTTATTCTGGCCTTATTTGGTTAAAGAAGTTGATTAACTTGTATG
AGTTTGAAAATAGAGAACATATTCTAATCAATTTCTCTGGGTTTAACATT
GATGTTTCTTCTTTTTTTGCTTAATATATTTTCCTATTATGCTTAACAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
back to top