CK934255

Overview
NameCK934255
Unique NameCK934255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length852
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934255_ssr49 microsatellite CK934255_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10573 contig Csv1_Contig10573:1..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934255 vs. ExPASy Swiss-Prot
Match: PME13_ARATH (Probable pectinesterase/pectinesterase inhibitor 13 OS=Arabidopsis thaliana GN=PME13 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.013e-11
Identity = 40/157 (25.48%), Postives = 82/157 (52.23%), Query Frame = 1
Query:  181 RFIKTSCSSTTYPTLCYKSLARHAS--LIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKIAHMTSNALALINSY 645
            + I+T CSST Y  +C K+L           +P     +++    A+ +    V+ K+         + DA++ C   + D+ +E   S+ ++ + + ++FE  + D+++W+SA ++ + TC DGFE+  +  + V+  +     +TSN+LALI ++
Sbjct:  107 KIIQTLCSSTLYMQICEKTLKNRTDKGFALDNPTTFLKSAIE---AVNEDLDLVLEKVLSLKTENQDDKDAIEQCKLLVEDAKEETVASLNKINVTEVNSFEKVVPDLESWLSAVMSYQETCLDGFEEGNLKSE-VKTSVNSSQVLTSNSLALIKTF 259          
BLAST of CK934255 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.940e-11
Identity = 49/182 (26.92%), Postives = 80/182 (43.96%), Query Frame = 1
Query:  133 SSSASRHGPSKIAADRRFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAMAKSTSAVMLKMSKSPGMKPREVDAMQDCLEELSDSVDELRKSIGEMGLIKAS-NFELTMSDIQTWVSAALTDETTCSDGFEKNTVNGKVVRAQIVKI-------AHMTSNALALINSYASL 654
            SS +S   P    +    +K  C +T YP+ C+ S++       T P+LL   SL V +      S+   K+  +     R   A+  C     D++D L  SI  +G +        ++S+++TW+SAALTD+ TC D      +N    R  + +I           SN+LA++     L
Sbjct:   59 SSPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAI---DELSSFPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAV--GELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGL 235          
The following BLAST results are available for this feature:
BLAST of CK934255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PME13_ARATH4.013e-1125.48Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME3_PHAVU8.940e-1126.92Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_D02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934255 ID=CK934255; Name=CK934255; organism=Citrus sinensis; type=EST; length=852bp
GGGGACATAACTCAATCCTCACTTCATTTGCTCATAATTTCAAAGGTCAG
AGAGAGAGACATGGAAGGTTCATCCTCAAATCATATGCTTAAATACTTTC
TCATTTTACTAGCCATTTTTTCCTACTTAAATTCAAGCTCAGCCTCTAGA
CATGGCCCCTCTAAAATTGCTGCTGACAGAAGGTTCATCAAAACATCTTG
CAGTTCAACAACTTATCCAACACTTTGCTATAAATCCCTTGCTAGACATG
CAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGCCCATGCATCCCTCAAC
GTGACCCTTGCAATGGCTAAATCAACGTCAGCCGTCATGTTAAAGATGTC
GAAAAGCCCTGGAATGAAGCCTAGAGAGGTGGATGCCATGCAAGATTGTT
TGGAGGAGCTGAGTGATTCAGTTGATGAGCTCAGAAAGTCCATTGGCGAA
ATGGGTCTGATCAAAGCTTCAAATTTTGAACTTACAATGAGTGATATACA
GACTTGGGTTAGTGCTGCTTTGACTGATGAGACTACTTGCAGCGATGGAT
TTGAGAAGAATACGGTGAATGGGAAAGTTGTGAGGGCCCAGATTGTGAAG
ATTGCTCATATGACTAGCAATGCCTTGGCTTTGATCAATAGTTATGCTTC
TCTTCGCGGTTAGATATTCTCATGATTAGCTCCATTATTGTAAGTGATTT
ATGCAGTATTAATCCTGCCTGTGGAGATCAGATTTATGAAAATGTAATCT
TTATTGCAAGCAAATAGCAGATCCAGAAAAAAAAAGTTGGATTTATCTAT
TTTCCTTTTCTGTTAGGGATGTCGAAGAAGCGTTGGNCAATGGCTTTGTA
AA
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