CK934258

Overview
NameCK934258
Unique NameCK934258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX30_XENLA (Sorting nexin-30 OS=Xenopus laevis GN=snx30 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.078e-20
Identity = 57/117 (48.72%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            L V+V DP K    ++ YI+Y V TKT   E+  PE  V RRY DF WLR++L E     FIPPLPEK  V+    RFS EF+E RR+ LD F+ RIA HP L  +E    FL A +
Sbjct:  106 LFVTVDDPKKHVCTMETYITYSVSTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEETQPTHFIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTAKD 222          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX30_MOUSE (Sorting nexin-30 OS=Mus musculus GN=Snx30 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 66/193 (34.20%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            L V+V DP K    ++ YI+YR+ TK+   E+  PE  V RRY DF WLR++L E      IPPLPEK  V+    RFS EF+E RR+ LD F+ RI  HP L  +E    FL A          +D   +KK+   L+    +    V+     + +P+     E+  +  Y+      L    + A R++K
Sbjct:   91 LFVTVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNVFLTA----------KDLNAYKKQGIALLSRVGESVKHVTGGYKLRSRPL-----EFAAISDYLDTFALKLGTIDRIAQRIIK 268          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX30_DANRE (Sorting nexin-30 OS=Danio rerio GN=snx30 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.187e-19
Identity = 54/117 (46.15%), Postives = 70/117 (59.83%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            L V+V DP K  + ++ YI+YRV TKT   E+  PE  V RRY DF WLR +L +      IPPLPEK  ++    RFS EF+E RR+ LD F+ R+A HP L  +E    FL A +
Sbjct:   82 LFVTVDDPKKHVSTMETYITYRVCTKTTRTEFDLPEYSVRRRYQDFDWLRIKLEDSQPTHLIPPLPEKFVMKGVVDRFSEEFVETRRKALDKFLKRVADHPVLSFNEHFNAFLSAKD 198          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX30_HUMAN (Sorting nexin-30 OS=Homo sapiens GN=SNX30 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.004e-18
Identity = 66/193 (34.20%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            L V V DP K    ++ YI+YR+ TK+   E+  PE  V RRY DF WLR +L E      IPPLPEK  V+    RFS EF+E RR+ LD F+ RI  HP L  +E    FL A          +D   +KK+   L+    +    V+     + +P+     E+  +  Y+      L    + A R++K
Sbjct:   91 LFVIVDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRSKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRITDHPVLSFNEHFNIFLTA----------KDLNAYKKQGIALLTRMGESVKHVTGGYKLRTRPL-----EFAAIGDYLDTFALKLGTIDRIAQRIIK 268          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_CRYNE (Sorting nexin-4 OS=Cryptococcus neoformans GN=SNX4 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.713e-18
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            ++ V V +P K   G +  Y+SY V T+T+ P ++ P  +V RR+ DFV+LR+ L + +    +PP+P+K  +E     RFS EF+E RR  L  F +RIA HP LQ+S+ +  FLQ+ E
Sbjct:   89 WMDVQVREPAKEHEGSKDMYVSYAVKTETSLPTFRKPLTVVRRRFQDFVFLREHLVKNFPACVVPPIPDKHRLEYIKGDRFSPEFVERRRLDLQRFADRIARHPVLQRSQLVNDFLQSTE 208          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX2_PONAB (Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            + + V+DP K+G+G+ AY++YRV TKT+   +   E  V RR+SDF+ L  +L  KY   G  +PP PEKS V        ++   S EF+E RR  L+ ++ R   HP L Q  DL+ FL++ E
Sbjct:  142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSE 266          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX2_MOUSE (Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            + + V+DP K+G+G+ AY++YRV TKT+   +   E  V RR+SDF+ L  +L  KY   G  +PP PEKS V        ++   S EF+E RR  L+ ++ R   HP L Q  DL+ FL++ E
Sbjct:  142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSE 266          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX2_MACFA (Sorting nexin-2 OS=Macaca fascicularis GN=SNX2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            + + V+DP K+G+G+ AY++YRV TKT+   +   E  V RR+SDF+ L  +L  KY   G  +PP PEKS V        ++   S EF+E RR  L+ ++ R   HP L Q  DL+ FL++ E
Sbjct:  142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSE 266          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX2_HUMAN (Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            + + V+DP K+G+G+ AY++YRV TKT+   +   E  V RR+SDF+ L  +L  KY   G  +PP PEKS V        ++   S EF+E RR  L+ ++ R   HP L Q  DL+ FL++ E
Sbjct:  142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSE 266          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX2_BOVIN (Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.238e-18
Identity = 50/125 (40.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--KGIFIPPLPEKSAV--------EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            + + V+DP K+G+G+ AY++YRV TKT+   +   E  V RR+SDF+ L  +L  KY   G  +PP PEKS V        ++   S EF+E RR  L+ ++ R   HP L Q  DL+ FL++ E
Sbjct:  142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLESSE 266          
The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX30_XENLA4.078e-2048.72Sorting nexin-30 OS=Xenopus laevis GN=snx30 PE=2 S... [more]
SNX30_MOUSE1.187e-1934.20Sorting nexin-30 OS=Mus musculus GN=Snx30 PE=2 SV=... [more]
SNX30_DANRE1.187e-1946.15Sorting nexin-30 OS=Danio rerio GN=snx30 PE=2 SV=1[more]
SNX30_HUMAN1.004e-1834.20Sorting nexin-30 OS=Homo sapiens GN=SNX30 PE=1 SV=... [more]
SNX4_CRYNE1.713e-1840.83Sorting nexin-4 OS=Cryptococcus neoformans GN=SNX4... [more]
SNX2_PONAB2.238e-1840.00Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=2 SV=1[more]
SNX2_MOUSE2.238e-1840.00Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2[more]
SNX2_MACFA2.238e-1840.00Sorting nexin-2 OS=Macaca fascicularis GN=SNX2 PE=... [more]
SNX2_HUMAN2.238e-1840.00Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2[more]
SNX2_BOVIN2.238e-1840.00Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bp
GGGGAAACCAAATCGTGTTGACTAAGAAAATACCTCAGGCTCAGGTTGTC
ACCGGTCGCTCTGGTGGTATCTCGCGCCTTAATTCGCAAGTTGCCGGTGC
CCAGCGCACTGCGCTCCACAGCGCATTTTAGACAACACCTCAATTTACAC
GCCTCACTACCAAACAAAAAGCTTCTGCTAGACTATTCAAATAGGAAGTT
ATTAATTCGTTTTCTCCTCAATCCTTCTTCTTCCGTTCTTCGGTTCCATT
CTCTAGTTCCCAATTAGATCATGATTAACACGGAGCAGCAGAGAAGCGCA
TCCGGATCGTCGCAGAGCCCTAGATCCCCGTCATCGCAGCCGTATTTATC
GGTGTCAGTAACCGATCCCGTGAAATTAGGCAATGGAGTACAAGCTTACA
TTTCCTATCGAGTCATCACCAAGACAAATTTTCCTGAATATCAAGGCCCC
GAGAAGATTGTTATTCGCCGTTACAGTGATTTTGTCTGGTTACGTGATCG
ACTTTTTGAGAAGTACAAGGGCATTTTCATTCCCCCTCTTCCTGAGAAGA
GTGCCGTAGAGAAGTTTCGTTTCAGTGCTGAATTTATTGAGATGAGACGC
CAAGGATTGGATTTGTTTGTCAATCGGATTGCTTCACATCCTGAGCTGCA
GCAAAGTGAGGATTTAAAAACATTTTTGCAGGCAGACGAAGAGACAATGG
AGAGATTAAGGTCTCAAGACACTGGTTATTTCAAAAAGAAGCCAGCTGAT
TTGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGTGATGTTGTTCT
TGGAAAAGAGAAGCCAGTTGAAGAATCTAATCCTGAATACGAGAAGCTGA
AACACTACATTTTTGAGCTGGAAAACCACTTGGCTGATGCTCAGAAACAT
GCNNNTCGTCTTGTCAAAAGN
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