CK934258
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_RAT (Sorting nexin-3 OS=Rattus norvegicus GN=Snx3 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16 Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681 +L + V++P +G G + +Y + KTN P ++ E V RRYSDF WLR L E+ + +PPLP K+ + + F + FIE R+QGL+ F+N++A HP Q L FLQ Sbjct: 28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_PONAB (Sorting nexin-3 OS=Pongo abelii GN=SNX3 PE=2 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16 Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681 +L + V++P +G G + +Y + KTN P ++ E V RRYSDF WLR L E+ + +PPLP K+ + + F + FIE R+QGL+ F+N++A HP Q L FLQ Sbjct: 28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_HUMAN (Sorting nexin-3 OS=Homo sapiens GN=SNX3 PE=1 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16 Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681 +L + V++P +G G + +Y + KTN P ++ E V RRYSDF WLR L E+ + +PPLP K+ + + F + FIE R+QGL+ F+N++A HP Q L FLQ Sbjct: 28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_BOVIN (Sorting nexin-3 OS=Bos taurus GN=SNX3 PE=2 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16 Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681 +L + V++P +G G + +Y + KTN P ++ E V RRYSDF WLR L E+ + +PPLP K+ + + F + FIE R+QGL+ F+N++A HP Q L FLQ Sbjct: 28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX12_HUMAN (Sorting nexin-12 OS=Homo sapiens GN=SNX12 PE=1 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 2.095e-16 Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--FR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMER 705 +L + + +P +G G + +Y V +TN P ++ E V RRYSDF WL++ L E+ I +PPLP K+ + FR F FIE RRQGL+ F+N+IA HP Q L FLQ EE ++R Sbjct: 29 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ--EEAIDR 153
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_YEAST (Sorting nexin-4 OS=Saccharomyces cerevisiae GN=SNX4 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16 Identity = 64/204 (31.37%), Postives = 101/204 (49.51%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGN---GVQAYISYRVITKTN---FPEYQG-PEKIVI--RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918 + + V+DP K Y+SY++ TKTN F + +G PE I++ RRYSD + L D L ++ IPPLP+K + RFS F + R L F+ R++ HP+L QS+ KTFL S+D +K D +Q KD +V+D + K V + N E+ +++ +L+ + K ++VK Sbjct: 27 WFEIIVSDPQKRTGDPGSSSGYVSYQISTKTNNTSFYDNRGDPESIIVVHRRYSDLLLLHDILLNRFPTCIIPPLPDKKVFQYIAGDRFSQRFTQKRCHSLQNFLRRVSLHPDLSQSKVFKTFLV----------SKDWESHRKVLQDSLQPNKD---EVTDAFMNAFKTVHKQNEEFTEIREKSDKLDRTVTKIDKLFHKVVK 217
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_KLULA (Sorting nexin-4 OS=Kluyveromyces lactis GN=SNX4 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16 Identity = 62/194 (31.96%), Postives = 95/194 (48.97%), Query Frame = 1 Query: 346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918 LSV V+DP K Q YI+Y+V TK + + V+RRY+DFV L L + + +PPLP+K + RFS F + R + L F+ R+ SH EL +S L+TFL + + + R TG S+VSDV++ K V E+ ++K +L+++L+ K + VK Sbjct: 17 LSVLVSDPQKQKTHSQTYITYQVSTKIDGKD---EPNCVVRRYNDFVLLHQILINDHPALLVPPLPDKKVLNYLSGDRFSHSFTQKRCRSLQTFMRRLLSHSELSKSRILETFLTSTD--WDVYRRSLTGQIS-------------TSEVSDVLINAFKHVNRQRDEFVEIKEKSEKLDHNLSHLDKLFHKSVK 192
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX12_MOUSE (Sorting nexin-12 OS=Mus musculus GN=Snx12 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16 Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV-EKFR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMER 705 +L + + +P +G G + +Y V +TN P ++ E V RRYSDF WL++ L E+ I +PPLP K+ FR F FIE RRQGL+ F+N+IA HP Q L FLQ EE ++R Sbjct: 29 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGKALKRHPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ--EEAIDR 152
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_MOUSE (Sorting nexin-3 OS=Mus musculus GN=Snx3 PE=2 SV=3) HSP 1 Score: 85.8853 bits (211), Expect = 3.573e-16 Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE--KFR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681 +L + V++P +G G + +Y + KTN P ++ E V RRYSDF WLR L E+ + +PPLP K+ + FR F FIE R+QGL+ F+N++A HP Q L FLQ Sbjct: 28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRHVPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_CANGA (Sorting nexin-4 OS=Candida glabrata GN=SNX4 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.666e-16 Identity = 63/203 (31.03%), Postives = 99/203 (48.77%), Query Frame = 1 Query: 346 LSVSVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEK-------IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918 L + V+DP K G+ Y+SY++ T+T+ P Y G +K +V RRY+D V L D L + IPPLP+K ++ RF F + R L F+ R++ HP L S+ L+ FL +E DT ++K A +Q + V+D V+ K V N E+ +++ +L+N + K R+VK Sbjct: 33 LEILVSDPQKRAGEAGLGPYVSYQISTRTDNPSYHGNQKASFDDIIVVHRRYNDVVLLHDILQNDHPTCIIPPLPDKKVLQYIAGDRFGRRFTQRRCHSLQNFLRRVSQHPILSTSKVLEIFLVGNE--------WDT--YRKNIAGTLQ--NAQKEDVTDAVMNAFKKVHNQNEEFTEIRDRSDKLDNSVNRINKVFHRVVK 223 The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bpback to top |