CK934258

Overview
NameCK934258
Unique NameCK934258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_RAT (Sorting nexin-3 OS=Rattus norvegicus GN=Snx3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681
            +L + V++P  +G G   + +Y +  KTN P ++  E  V RRYSDF WLR  L E+   + +PPLP K+ + +  F  +       FIE R+QGL+ F+N++A HP  Q    L  FLQ
Sbjct:   28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_PONAB (Sorting nexin-3 OS=Pongo abelii GN=SNX3 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681
            +L + V++P  +G G   + +Y +  KTN P ++  E  V RRYSDF WLR  L E+   + +PPLP K+ + +  F  +       FIE R+QGL+ F+N++A HP  Q    L  FLQ
Sbjct:   28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_HUMAN (Sorting nexin-3 OS=Homo sapiens GN=SNX3 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681
            +L + V++P  +G G   + +Y +  KTN P ++  E  V RRYSDF WLR  L E+   + +PPLP K+ + +  F  +       FIE R+QGL+ F+N++A HP  Q    L  FLQ
Sbjct:   28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_BOVIN (Sorting nexin-3 OS=Bos taurus GN=SNX3 PE=2 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.604e-16
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681
            +L + V++P  +G G   + +Y +  KTN P ++  E  V RRYSDF WLR  L E+   + +PPLP K+ + +  F  +       FIE R+QGL+ F+N++A HP  Q    L  FLQ
Sbjct:   28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX12_HUMAN (Sorting nexin-12 OS=Homo sapiens GN=SNX12 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 2.095e-16
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--FR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMER 705
            +L + + +P  +G G   + +Y V  +TN P ++  E  V RRYSDF WL++ L E+   I +PPLP K+   +  FR     F   FIE RRQGL+ F+N+IA HP  Q    L  FLQ  EE ++R
Sbjct:   29 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ--EEAIDR 153          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_YEAST (Sorting nexin-4 OS=Saccharomyces cerevisiae GN=SNX4 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 64/204 (31.37%), Postives = 101/204 (49.51%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGN---GVQAYISYRVITKTN---FPEYQG-PEKIVI--RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            +  + V+DP K          Y+SY++ TKTN   F + +G PE I++  RRYSD + L D L  ++    IPPLP+K   +     RFS  F + R   L  F+ R++ HP+L QS+  KTFL           S+D    +K   D +Q  KD   +V+D  +   K V + N E+ +++    +L+  +    K   ++VK
Sbjct:   27 WFEIIVSDPQKRTGDPGSSSGYVSYQISTKTNNTSFYDNRGDPESIIVVHRRYSDLLLLHDILLNRFPTCIIPPLPDKKVFQYIAGDRFSQRFTQKRCHSLQNFLRRVSLHPDLSQSKVFKTFLV----------SKDWESHRKVLQDSLQPNKD---EVTDAFMNAFKTVHKQNEEFTEIREKSDKLDRTVTKIDKLFHKVVK 217          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_KLULA (Sorting nexin-4 OS=Kluyveromyces lactis GN=SNX4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 62/194 (31.96%), Postives = 95/194 (48.97%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            LSV V+DP K     Q YI+Y+V TK +  +       V+RRY+DFV L   L   +  + +PPLP+K  +      RFS  F + R + L  F+ R+ SH EL +S  L+TFL + +   +  R   TG                 S+VSDV++   K V     E+ ++K    +L+++L+   K   + VK
Sbjct:   17 LSVLVSDPQKQKTHSQTYITYQVSTKIDGKD---EPNCVVRRYNDFVLLHQILINDHPALLVPPLPDKKVLNYLSGDRFSHSFTQKRCRSLQTFMRRLLSHSELSKSRILETFLTSTD--WDVYRRSLTGQIS-------------TSEVSDVLINAFKHVNRQRDEFVEIKEKSEKLDHNLSHLDKLFHKSVK 192          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX12_MOUSE (Sorting nexin-12 OS=Mus musculus GN=Snx12 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV-EKFR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMER 705
            +L + + +P  +G G   + +Y V  +TN P ++  E  V RRYSDF WL++ L E+   I +PPLP K+     FR     F   FIE RRQGL+ F+N+IA HP  Q    L  FLQ  EE ++R
Sbjct:   29 FLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGKALKRHPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ--EEAIDR 152          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_MOUSE (Sorting nexin-3 OS=Mus musculus GN=Snx3 PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 3.573e-16
Identity = 48/120 (40.00%), Postives = 68/120 (56.67%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE--KFR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681
            +L + V++P  +G G   + +Y +  KTN P ++  E  V RRYSDF WLR  L E+   + +PPLP K+ +    FR     F   FIE R+QGL+ F+N++A HP  Q    L  FLQ
Sbjct:   28 FLEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGKAFLRHVPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ 146          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_CANGA (Sorting nexin-4 OS=Candida glabrata GN=SNX4 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.666e-16
Identity = 63/203 (31.03%), Postives = 99/203 (48.77%), Query Frame = 1
Query:  346 LSVSVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEK-------IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            L + V+DP K     G+  Y+SY++ T+T+ P Y G +K       +V RRY+D V L D L   +    IPPLP+K  ++     RF   F + R   L  F+ R++ HP L  S+ L+ FL  +E         DT  ++K  A  +Q     +  V+D V+   K V   N E+ +++    +L+N +    K   R+VK
Sbjct:   33 LEILVSDPQKRAGEAGLGPYVSYQISTRTDNPSYHGNQKASFDDIIVVHRRYNDVVLLHDILQNDHPTCIIPPLPDKKVLQYIAGDRFGRRFTQRRCHSLQNFLRRVSQHPILSTSKVLEIFLVGNE--------WDT--YRKNIAGTLQ--NAQKEDVTDAVMNAFKKVHNQNEEFTEIRDRSDKLDNSVNRINKVFHRVVK 223          
The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX3_RAT1.604e-1638.33Sorting nexin-3 OS=Rattus norvegicus GN=Snx3 PE=1 ... [more]
SNX3_PONAB1.604e-1638.33Sorting nexin-3 OS=Pongo abelii GN=SNX3 PE=2 SV=3[more]
SNX3_HUMAN1.604e-1638.33Sorting nexin-3 OS=Homo sapiens GN=SNX3 PE=1 SV=3[more]
SNX3_BOVIN1.604e-1638.33Sorting nexin-3 OS=Bos taurus GN=SNX3 PE=2 SV=3[more]
SNX12_HUMAN2.095e-1640.63Sorting nexin-12 OS=Homo sapiens GN=SNX12 PE=1 SV=... [more]
SNX4_YEAST2.735e-1631.37Sorting nexin-4 OS=Saccharomyces cerevisiae GN=SNX... [more]
SNX4_KLULA2.735e-1631.96Sorting nexin-4 OS=Kluyveromyces lactis GN=SNX4 PE... [more]
SNX12_MOUSE2.735e-1640.94Sorting nexin-12 OS=Mus musculus GN=Snx12 PE=2 SV=... [more]
SNX3_MOUSE3.573e-1640.00Sorting nexin-3 OS=Mus musculus GN=Snx3 PE=2 SV=3[more]
SNX4_CANGA4.666e-1631.03Sorting nexin-4 OS=Candida glabrata GN=SNX4 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bp
GGGGAAACCAAATCGTGTTGACTAAGAAAATACCTCAGGCTCAGGTTGTC
ACCGGTCGCTCTGGTGGTATCTCGCGCCTTAATTCGCAAGTTGCCGGTGC
CCAGCGCACTGCGCTCCACAGCGCATTTTAGACAACACCTCAATTTACAC
GCCTCACTACCAAACAAAAAGCTTCTGCTAGACTATTCAAATAGGAAGTT
ATTAATTCGTTTTCTCCTCAATCCTTCTTCTTCCGTTCTTCGGTTCCATT
CTCTAGTTCCCAATTAGATCATGATTAACACGGAGCAGCAGAGAAGCGCA
TCCGGATCGTCGCAGAGCCCTAGATCCCCGTCATCGCAGCCGTATTTATC
GGTGTCAGTAACCGATCCCGTGAAATTAGGCAATGGAGTACAAGCTTACA
TTTCCTATCGAGTCATCACCAAGACAAATTTTCCTGAATATCAAGGCCCC
GAGAAGATTGTTATTCGCCGTTACAGTGATTTTGTCTGGTTACGTGATCG
ACTTTTTGAGAAGTACAAGGGCATTTTCATTCCCCCTCTTCCTGAGAAGA
GTGCCGTAGAGAAGTTTCGTTTCAGTGCTGAATTTATTGAGATGAGACGC
CAAGGATTGGATTTGTTTGTCAATCGGATTGCTTCACATCCTGAGCTGCA
GCAAAGTGAGGATTTAAAAACATTTTTGCAGGCAGACGAAGAGACAATGG
AGAGATTAAGGTCTCAAGACACTGGTTATTTCAAAAAGAAGCCAGCTGAT
TTGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGTGATGTTGTTCT
TGGAAAAGAGAAGCCAGTTGAAGAATCTAATCCTGAATACGAGAAGCTGA
AACACTACATTTTTGAGCTGGAAAACCACTTGGCTGATGCTCAGAAACAT
GCNNNTCGTCTTGTCAAAAGN
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