CK934258

Overview
NameCK934258
Unique NameCK934258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_NEUCR (Sorting nexin-4 OS=Neurospora crassa GN=snx-4 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.358e-15
Identity = 45/119 (37.82%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            L  +V+DP K  +G + AY+SY + T T FP +Q P+  V RR++DFV+L   L   Y+   +PPLP+K  +E     RF  +F   R   L  F+ R+A HP L++++ L  FL++ +
Sbjct:   69 LDCTVSDPHKENDGTKDAYVSYLITTNTTFPSFQKPKTTVRRRFTDFVFLYKVLCRDYQACAVPPLPDKQRMEYVRGDRFGTDFTARRAYSLQRFLARLALHPILRKADILHAFLESPD 187          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_USTMA (Sorting nexin-3 OS=Ustilago maydis GN=SNX3 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681
            +L V V  P+  G G + Y  Y ++T+TN P ++     V RRYSDF + RD L  +   + IPPLP K  V   RF+ E IE RR+GL+ F+  +A HP LQ  S+ +  FLQ
Sbjct:    8 FLEVEVRSPLTHGVGRKMYTDYEIVTRTNIPAFKLRYSSVRRRYSDFEYFRDILERESTRVNIPPLPGK--VFTNRFTDEVIEARREGLERFLQVVAGHPLLQTGSKVMAAFLQ 119          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_CRYNE (Sorting nexin-3 OS=Cryptococcus neoformans GN=SNX3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 47/114 (41.23%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681
            +L + + +P+  G G + Y  Y ++  TN P ++     V RRYSDF   RD L  +   + IPPLP K  V   RFS E IE RR+GL  F+  +A HP LQ  S+ L  FLQ
Sbjct:   21 FLEIEIRNPMTHGIGRKMYTDYEIVCMTNIPAFKLRHSAVRRRYSDFEAFRDILERESTRVNIPPLPGKVRVFTNRFSDEVIEQRREGLQRFLEIVAGHPLLQTGSKVLCAFLQ 134          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_ASPOR (Sorting nexin-3 OS=Aspergillus oryzae GN=snx3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681
            +L + V +P   G     Y SY ++ +TN P ++    +V RRYSDF + RD L  +   + IPPLP K  V   RFS + IE RR+GL  F+  +A HP LQ  S+ L +F+Q
Sbjct:   22 FLEIEVRNPQTHGTSRNMYTSYEIVCRTNIPAFKLKHSVVRRRYSDFEYFRDILERESTRVTIPPLPGK--VFTNRFSDDVIEHRREGLQRFLQIVAGHPLLQTGSKVLASFIQ 133          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_ASPFU (Sorting nexin-3 OS=Aspergillus fumigatus GN=snx3 PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.560e-14
Identity = 46/114 (40.35%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681
            +L + V +P   G     Y SY ++ +TN P ++    +V RRYSDF + RD L  +   + IPPLP K  V   RFS + IE RR+GL  F+  +A HP LQ  S+ L +F+Q
Sbjct:   22 FLEIEVRNPQTHGTSRNMYTSYEIVCRTNIPAFKLKHSVVRRRYSDFEYFRDILERESTRVTIPPLPGK--VFTNRFSDDVIEHRREGLQRFLQIVAGHPLLQTGSKVLASFIQ 133          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_MAGGR (Sorting nexin-4 OS=Magnaporthe grisea GN=SNX4 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.344e-14
Identity = 45/119 (37.82%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            L  +V+ P+K  +G + A++SY V T T F ++Q P+  V RR++DFV+L   L  +Y    +PPLP+K  +E     RF  +F   R   L  F+ R A HP L++S  L TFL++ +
Sbjct:   63 LECNVSSPLKENDGTKDAFVSYLVTTHTTFADFQKPDASVRRRFTDFVFLFKTLSREYPASAVPPLPDKQRMEYVRGDRFGNDFTSRRAYSLRRFLARCALHPVLRRSAILHTFLESPD 181          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_ASPFU (Sorting nexin-4 OS=Aspergillus fumigatus GN=snx4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.367e-14
Identity = 50/131 (38.17%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA-DEETMERLRSQDT 723
            L   V  P+K  +G + AYISY V T T+F  +Q P+  V RR++DF +L   L+ +Y    +PPLPEK  +E     RF  EF   R   L  F+ R+  HP L+++  L  FL++ D     RL S  T
Sbjct:   73 LECRVDSPLKENDGTKDAYISYLVTTHTDFKSFQKPDFAVRRRFTDFYFLYKTLYREYPACAVPPLPEKHKMEYVTGDRFGPEFTSRRAWSLHRFLKRLTLHPVLRRAPLLAIFLESPDWNAHMRLHSTRT 203          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_ASHGO (Sorting nexin-4 OS=Ashbya gossypii GN=SNX4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.367e-14
Identity = 59/193 (30.57%), Postives = 96/193 (49.74%), Query Frame = 1
Query:  352 VSVTDPVKLGNGVQA---YISYRVITK--TNFPEYQGPEKIVI--RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF-RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL-QADEETMERLRSQDTGYFKKK---PADLMQIFKDVQSKVSDVVLGKEK--PVEESNPEYEKLKHYIFELENHLAD 888
            + V+DP K      +   Y++Y++ +K  T   +  G + I +  RRYSDFV L   L   Y    +PPLP+K  +    RFS  F + R   L  F+ R+A HP L QS+ L TFL  +D +  ++  ++  G    K      +M  FK V S+  + V  KEK   ++ +  + +KL H + + +  +A+
Sbjct:   12 IIVSDPQKQRGDKSSSGSYVTYQISSKPATEGDKRSGEDDITVVHRRYSDFVLLYQILANDYPACIVPPLPDKKVLNYLDRFSQSFTQKRCHSLQNFLQRLAQHPVLSQSKILHTFLVSSDWDAYQKSLAETVGNLSNKEELTETIMNAFKSVHSQSDEFVEIKEKSGKLDHNVSKIDKLFHRVVKKQEAIAE 204          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_EMENI (Sorting nexin-4 OS=Emericella nidulans GN=snx4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.449e-14
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQ-AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 690
            L   V  P+K  +G + AYISY V T T+F  +Q  +  V RR++DFV+L   L+ +Y    +PPLP+K  +E     RF AEF   R   L  F+ R+  HP L+++  L  FL++ +
Sbjct:   71 LECRVDTPIKENDGTKDAYISYLVTTHTDFKSFQKADFTVRRRFTDFVFLYKTLYREYPACAVPPLPDKHKMEYVRGDRFGAEFTTRRAWSLHRFLKRLTLHPVLRRAPLLAIFLESPD 189          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_CANAL (Sorting nexin-3 OS=Candida albicans GN=SNX3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.271e-13
Identity = 42/117 (35.90%), Postives = 67/117 (57.26%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADE 690
            +L + V +P+  G G   +  Y ++ +TN P ++  E  + RRYSDFV  R  L ++   + IPPLP K  +   +F+   IE RRQGL+ F+  ++ HP LQ  S+ L  F+Q ++
Sbjct:   33 FLEIEVKNPLTHGYGSNLFTDYEIVCRTNIPAFKKRESRIQRRYSDFVAFRKILEQETTRVIIPPLPGKIFLNSNKFNDLNIEKRRQGLEKFLIVVSGHPLLQTGSKSLIEFIQNEK 149          
The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX4_NEUCR1.358e-1537.82Sorting nexin-4 OS=Neurospora crassa GN=snx-4 PE=3... [more]
SNX3_USTMA1.501e-1442.11Sorting nexin-3 OS=Ustilago maydis GN=SNX3 PE=3 SV... [more]
SNX3_CRYNE1.501e-1441.23Sorting nexin-3 OS=Cryptococcus neoformans GN=SNX3... [more]
SNX3_ASPOR2.560e-1440.35Sorting nexin-3 OS=Aspergillus oryzae GN=snx3 PE=3... [more]
SNX3_ASPFU2.560e-1440.35Sorting nexin-3 OS=Aspergillus fumigatus GN=snx3 P... [more]
SNX4_MAGGR3.344e-1437.82Sorting nexin-4 OS=Magnaporthe grisea GN=SNX4 PE=3... [more]
SNX4_ASPFU4.367e-1438.17Sorting nexin-4 OS=Aspergillus fumigatus GN=snx4 P... [more]
SNX4_ASHGO4.367e-1430.57Sorting nexin-4 OS=Ashbya gossypii GN=SNX4 PE=3 SV... [more]
SNX4_EMENI7.449e-1437.82Sorting nexin-4 OS=Emericella nidulans GN=snx4 PE=... [more]
SNX3_CANAL1.271e-1335.90Sorting nexin-3 OS=Candida albicans GN=SNX3 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bp
GGGGAAACCAAATCGTGTTGACTAAGAAAATACCTCAGGCTCAGGTTGTC
ACCGGTCGCTCTGGTGGTATCTCGCGCCTTAATTCGCAAGTTGCCGGTGC
CCAGCGCACTGCGCTCCACAGCGCATTTTAGACAACACCTCAATTTACAC
GCCTCACTACCAAACAAAAAGCTTCTGCTAGACTATTCAAATAGGAAGTT
ATTAATTCGTTTTCTCCTCAATCCTTCTTCTTCCGTTCTTCGGTTCCATT
CTCTAGTTCCCAATTAGATCATGATTAACACGGAGCAGCAGAGAAGCGCA
TCCGGATCGTCGCAGAGCCCTAGATCCCCGTCATCGCAGCCGTATTTATC
GGTGTCAGTAACCGATCCCGTGAAATTAGGCAATGGAGTACAAGCTTACA
TTTCCTATCGAGTCATCACCAAGACAAATTTTCCTGAATATCAAGGCCCC
GAGAAGATTGTTATTCGCCGTTACAGTGATTTTGTCTGGTTACGTGATCG
ACTTTTTGAGAAGTACAAGGGCATTTTCATTCCCCCTCTTCCTGAGAAGA
GTGCCGTAGAGAAGTTTCGTTTCAGTGCTGAATTTATTGAGATGAGACGC
CAAGGATTGGATTTGTTTGTCAATCGGATTGCTTCACATCCTGAGCTGCA
GCAAAGTGAGGATTTAAAAACATTTTTGCAGGCAGACGAAGAGACAATGG
AGAGATTAAGGTCTCAAGACACTGGTTATTTCAAAAAGAAGCCAGCTGAT
TTGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGTGATGTTGTTCT
TGGAAAAGAGAAGCCAGTTGAAGAATCTAATCCTGAATACGAGAAGCTGA
AACACTACATTTTTGAGCTGGAAAACCACTTGGCTGATGCTCAGAAACAT
GCNNNTCGTCTTGTCAAAAGN
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