CK934258

Overview
NameCK934258
Unique NameCK934258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_GIBZE (Sorting nexin-3 OS=Gibberella zeae GN=SNX3 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADEETMERLRSQD 720
            +L + V +P   G G   Y  Y ++ +TN P ++  +  V RRYSDF + RD L  +   + IPPLP K  V   RFS + IE RR GL+ F+  +  HP LQ  S+ L  F+Q   E + RLR  D
Sbjct:   19 FLEIEVRNPRTHGMGRHMYTDYEILCRTNIPAFKLRQSSVRRRYSDFEYFRDILERESARVTIPPLPGK--VFTNRFSDDVIEGRRAGLEKFLKIVVGHPLLQTGSKVLAAFVQG--EFVIRLRYHD 141          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_NEUCR (Sorting nexin-3 OS=Neurospora crassa GN=snx-3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681
            +L + V +P   G G   Y  Y ++ +TN P ++  +  V RRYSDF + RD L  +   + IPPLP K  V   RFS + IE RR GL+ F+  +  HP LQ  S+ L  F+Q
Sbjct:   22 FLEIEVRNPRTHGIGRHMYTDYEIVCRTNIPAFKLRQSTVRRRYSDFEYFRDILERESARVTIPPLPGK--VFTNRFSDDVIEGRRAGLEKFLKIVVGHPLLQTGSKVLAAFVQ 133          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX18_MOUSE (Sorting nexin-18 OS=Mus musculus GN=Snx18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  355 SVTDPVKLGN--GVQAYISYRVI-TKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQ 717
            ++ DP K     G+++YISY+++ T T  P        V RRY  F WL  RL EK+  I +P LPEK A    RF  +FI  RR+GL  ++N +ASHP L Q +  + FL     T E+   Q
Sbjct:  269 TIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHFDWLYARLAEKFPVISVPHLPEKQATG--RFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCPSSTDEKAWKQ 382          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX18_HUMAN (Sorting nexin-18 OS=Homo sapiens GN=SNX18 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  355 SVTDPVKLGN--GVQAYISYRVI-TKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQ 717
            ++ DP K     G+++YISY+++ T T  P        V RRY  F WL  RL EK+  I +P LPEK A    RF  +FI  RR+GL  ++N +ASHP L Q +  + FL     T E+   Q
Sbjct:  279 TIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHFDWLYARLAEKFPVISVPHLPEKQATG--RFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCPSSTDEKAWKQ 392          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_SCHPO (Sorting nexin-3 OS=Schizosaccharomyces pombe GN=snx3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.396e-12
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQ-QSEDLKTFLQADE 690
            L + V +P   G G   + +Y ++ +TN P ++     V RRYS+F    D L  +   + IPPLP K   ++FR   + IE RRQGL+ F+  +A HP +Q  S  L +FLQ+ E
Sbjct:   25 LEIDVINPQTHGIGRNMFTTYEIVCRTNMPYFRLHNSSVRRRYSEFEKFHDMLERESGRVSIPPLPGKIFTQRFR--DDVIEERRQGLENFLRLVAGHPLIQTHSRVLSSFLQSPE 138          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: VPS5_YEAST (Vacuolar protein sorting-associated protein 5 OS=Saccharomyces cerevisiae GN=VPS5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1
Query:  352 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETME 702
            V V DPVK+G     ++ Y VI++++  E +  +  V RRY DF WL  +L   + G  IPP PEK +V  F+    FIE RR  ++  + +I   P LQ+ +D   FL +D+ + E
Sbjct:  283 VEVKDPVKVGELTSIHVEYTVISESSLLELKYAQ--VSRRYRDFRWLYRQLQNNHWGKVIPPPPEKQSVGSFK--ENFIENRRFQMESMLKKICQDPVLQKDKDFLLFLTSDDFSSE 395          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_YARLI (Sorting nexin-3 OS=Yarrowia lipolytica GN=SNX3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 1
Query:  343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681
            +L + V  P   G   + Y  Y ++ +TN P ++    +V RRYSDF   R+ L  +   + IP LP K  V   RFS E IE RR+GL+ F+  +A HP LQ  S+ L  F+Q
Sbjct:   31 FLEIEVRSPQTHGIARKMYTDYEIVCRTNIPVFKLKSSVVRRRYSDFECFREILERESTRVSIPSLPGK--VFTNRFSDEVIEARREGLEKFLQTVAGHPLLQTGSKVLCAFIQ 142          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX5_BOVIN (Sorting nexin-5 OS=Bos taurus GN=SNX5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12
Identity = 53/203 (26.11%), Postives = 89/203 (43.84%), Query Frame = 1
Query:  400 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLP------------------------EKSAVEKFRFSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLM-QIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            + + V TKT  P +Q PE  V R++ DFVWL D L E   Y G+ IPP P                        E+ A  K    AE++ + ++ +   ++F+ R++SHP L +  +   FL+ D         QD    +K   ++    FK V     +V+    K V++    +E+ K ++    N + D+   A R+ +
Sbjct:   45 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYD---------QDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDF---FEQEKTFLINYYNRIKDSCAKADRMTR 235          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_XENTR (Sorting nexin-33 OS=Xenopus tropicalis GN=snx33 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  349 SVSVTDPVKLGN--GVQAYISYRVITKT-NFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 693
            S SV +P K     G+++YISYR+     N P Y        RRY  F WL +RL  K+  I +P LPEK A    RF  +FI+ R++ L L+++ + SHP L Q +  + FL   +E
Sbjct:  206 SCSVEEPTKQTKFKGIKSYISYRLTPDPCNSPVY--------RRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RFEEDFIQKRKRRLVLWMDHMTSHPVLSQYDGFQHFLSCQDE 313          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_MOUSE (Sorting nexin-33 OS=Mus musculus GN=Snx33 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  355 SVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 678
            S+ DP K     G+++YISY++      P + G    V RRY  F WL +RL  K+  I +P LPEK A    RF  +FIE R++ L L+++ + SHP L Q E  + FL
Sbjct:  233 SIEDPTKQTKFKGIKSYISYKLT-----PTHAGSP--VYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFL 333          
The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX3_GIBZE2.167e-1339.37Sorting nexin-3 OS=Gibberella zeae GN=SNX3 PE=3 SV... [more]
SNX3_NEUCR8.236e-1339.47Sorting nexin-3 OS=Neurospora crassa GN=snx-3 PE=3... [more]
SNX18_MOUSE8.236e-1339.52Sorting nexin-18 OS=Mus musculus GN=Snx18 PE=2 SV=... [more]
SNX18_HUMAN8.236e-1339.52Sorting nexin-18 OS=Homo sapiens GN=SNX18 PE=1 SV=... [more]
SNX3_SCHPO2.396e-1237.07Sorting nexin-3 OS=Schizosaccharomyces pombe GN=sn... [more]
VPS5_YEAST4.088e-1236.75Vacuolar protein sorting-associated protein 5 OS=S... [more]
SNX3_YARLI4.088e-1238.60Sorting nexin-3 OS=Yarrowia lipolytica GN=SNX3 PE=... [more]
SNX5_BOVIN9.106e-1226.11Sorting nexin-5 OS=Bos taurus GN=SNX5 PE=2 SV=1[more]
SNX33_XENTR1.189e-1138.14Sorting nexin-33 OS=Xenopus tropicalis GN=snx33 PE... [more]
SNX33_MOUSE1.553e-1140.00Sorting nexin-33 OS=Mus musculus GN=Snx33 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bp
GGGGAAACCAAATCGTGTTGACTAAGAAAATACCTCAGGCTCAGGTTGTC
ACCGGTCGCTCTGGTGGTATCTCGCGCCTTAATTCGCAAGTTGCCGGTGC
CCAGCGCACTGCGCTCCACAGCGCATTTTAGACAACACCTCAATTTACAC
GCCTCACTACCAAACAAAAAGCTTCTGCTAGACTATTCAAATAGGAAGTT
ATTAATTCGTTTTCTCCTCAATCCTTCTTCTTCCGTTCTTCGGTTCCATT
CTCTAGTTCCCAATTAGATCATGATTAACACGGAGCAGCAGAGAAGCGCA
TCCGGATCGTCGCAGAGCCCTAGATCCCCGTCATCGCAGCCGTATTTATC
GGTGTCAGTAACCGATCCCGTGAAATTAGGCAATGGAGTACAAGCTTACA
TTTCCTATCGAGTCATCACCAAGACAAATTTTCCTGAATATCAAGGCCCC
GAGAAGATTGTTATTCGCCGTTACAGTGATTTTGTCTGGTTACGTGATCG
ACTTTTTGAGAAGTACAAGGGCATTTTCATTCCCCCTCTTCCTGAGAAGA
GTGCCGTAGAGAAGTTTCGTTTCAGTGCTGAATTTATTGAGATGAGACGC
CAAGGATTGGATTTGTTTGTCAATCGGATTGCTTCACATCCTGAGCTGCA
GCAAAGTGAGGATTTAAAAACATTTTTGCAGGCAGACGAAGAGACAATGG
AGAGATTAAGGTCTCAAGACACTGGTTATTTCAAAAAGAAGCCAGCTGAT
TTGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGTGATGTTGTTCT
TGGAAAAGAGAAGCCAGTTGAAGAATCTAATCCTGAATACGAGAAGCTGA
AACACTACATTTTTGAGCTGGAAAACCACTTGGCTGATGCTCAGAAACAT
GCNNNTCGTCTTGTCAAAAGN
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