CK934258
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_GIBZE (Sorting nexin-3 OS=Gibberella zeae GN=SNX3 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13 Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADEETMERLRSQD 720 +L + V +P G G Y Y ++ +TN P ++ + V RRYSDF + RD L + + IPPLP K V RFS + IE RR GL+ F+ + HP LQ S+ L F+Q E + RLR D Sbjct: 19 FLEIEVRNPRTHGMGRHMYTDYEILCRTNIPAFKLRQSSVRRRYSDFEYFRDILERESARVTIPPLPGK--VFTNRFSDDVIEGRRAGLEKFLKIVVGHPLLQTGSKVLAAFVQG--EFVIRLRYHD 141
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_NEUCR (Sorting nexin-3 OS=Neurospora crassa GN=snx-3 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13 Identity = 45/114 (39.47%), Postives = 63/114 (55.26%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681 +L + V +P G G Y Y ++ +TN P ++ + V RRYSDF + RD L + + IPPLP K V RFS + IE RR GL+ F+ + HP LQ S+ L F+Q Sbjct: 22 FLEIEVRNPRTHGIGRHMYTDYEIVCRTNIPAFKLRQSTVRRRYSDFEYFRDILERESARVTIPPLPGK--VFTNRFSDDVIEGRRAGLEKFLKIVVGHPLLQTGSKVLAAFVQ 133
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX18_MOUSE (Sorting nexin-18 OS=Mus musculus GN=Snx18 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13 Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 Query: 355 SVTDPVKLGN--GVQAYISYRVI-TKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQ 717 ++ DP K G+++YISY+++ T T P V RRY F WL RL EK+ I +P LPEK A RF +FI RR+GL ++N +ASHP L Q + + FL T E+ Q Sbjct: 269 TIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHFDWLYARLAEKFPVISVPHLPEKQATG--RFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCPSSTDEKAWKQ 382
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX18_HUMAN (Sorting nexin-18 OS=Homo sapiens GN=SNX18 PE=1 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 8.236e-13 Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 Query: 355 SVTDPVKLGN--GVQAYISYRVI-TKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQ 717 ++ DP K G+++YISY+++ T T P V RRY F WL RL EK+ I +P LPEK A RF +FI RR+GL ++N +ASHP L Q + + FL T E+ Q Sbjct: 279 TIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHFDWLYARLAEKFPVISVPHLPEKQATG--RFEEDFISKRRKGLIWWMNHMASHPVLAQCDVFQHFLTCPSSTDEKAWKQ 392
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_SCHPO (Sorting nexin-3 OS=Schizosaccharomyces pombe GN=snx3 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.396e-12 Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1 Query: 346 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQ-QSEDLKTFLQADE 690 L + V +P G G + +Y ++ +TN P ++ V RRYS+F D L + + IPPLP K ++FR + IE RRQGL+ F+ +A HP +Q S L +FLQ+ E Sbjct: 25 LEIDVINPQTHGIGRNMFTTYEIVCRTNMPYFRLHNSSVRRRYSEFEKFHDMLERESGRVSIPPLPGKIFTQRFR--DDVIEERRQGLENFLRLVAGHPLIQTHSRVLSSFLQSPE 138
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: VPS5_YEAST (Vacuolar protein sorting-associated protein 5 OS=Saccharomyces cerevisiae GN=VPS5 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12 Identity = 43/117 (36.75%), Postives = 65/117 (55.56%), Query Frame = 1 Query: 352 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETME 702 V V DPVK+G ++ Y VI++++ E + + V RRY DF WL +L + G IPP PEK +V F+ FIE RR ++ + +I P LQ+ +D FL +D+ + E Sbjct: 283 VEVKDPVKVGELTSIHVEYTVISESSLLELKYAQ--VSRRYRDFRWLYRQLQNNHWGKVIPPPPEKQSVGSFK--ENFIENRRFQMESMLKKICQDPVLQKDKDFLLFLTSDDFSSE 395
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX3_YARLI (Sorting nexin-3 OS=Yarrowia lipolytica GN=SNX3 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12 Identity = 44/114 (38.60%), Postives = 62/114 (54.39%), Query Frame = 1 Query: 343 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 681 +L + V P G + Y Y ++ +TN P ++ +V RRYSDF R+ L + + IP LP K V RFS E IE RR+GL+ F+ +A HP LQ S+ L F+Q Sbjct: 31 FLEIEVRSPQTHGIARKMYTDYEIVCRTNIPVFKLKSSVVRRRYSDFECFREILERESTRVSIPSLPGK--VFTNRFSDEVIEARREGLEKFLQTVAGHPLLQTGSKVLCAFIQ 142
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX5_BOVIN (Sorting nexin-5 OS=Bos taurus GN=SNX5 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.106e-12 Identity = 53/203 (26.11%), Postives = 89/203 (43.84%), Query Frame = 1 Query: 400 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLP------------------------EKSAVEKFRFSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLM-QIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918 + + V TKT P +Q PE V R++ DFVWL D L E Y G+ IPP P E+ A K AE++ + ++ + ++F+ R++SHP L + + FL+ D QD +K ++ FK V +V+ K V++ +E+ K ++ N + D+ A R+ + Sbjct: 45 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYD---------QDLSVRRKNTKEMFGGFFKSVVKSADEVLFSGVKEVDDF---FEQEKTFLINYYNRIKDSCAKADRMTR 235
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_XENTR (Sorting nexin-33 OS=Xenopus tropicalis GN=snx33 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.189e-11 Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 1 Query: 349 SVSVTDPVKLGN--GVQAYISYRVITKT-NFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 693 S SV +P K G+++YISYR+ N P Y RRY F WL +RL K+ I +P LPEK A RF +FI+ R++ L L+++ + SHP L Q + + FL +E Sbjct: 206 SCSVEEPTKQTKFKGIKSYISYRLTPDPCNSPVY--------RRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RFEEDFIQKRKRRLVLWMDHMTSHPVLSQYDGFQHFLSCQDE 313
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_MOUSE (Sorting nexin-33 OS=Mus musculus GN=Snx33 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.553e-11 Identity = 44/110 (40.00%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 355 SVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 678 S+ DP K G+++YISY++ P + G V RRY F WL +RL K+ I +P LPEK A RF +FIE R++ L L+++ + SHP L Q E + FL Sbjct: 233 SIEDPTKQTKFKGIKSYISYKLT-----PTHAGSP--VYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFL 333 The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bpback to top |