CK934258
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX5_HUMAN (Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11 Identity = 52/203 (25.62%), Postives = 90/203 (44.33%), Query Frame = 1 Query: 400 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLP------------------------EKSAVEKFRFSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLM-QIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918 + + V TKT P +Q PE V R++ DFVWL D L E Y G+ IPP P E+ A K AE++ + ++ + ++F+ R++SHP L + + FL+ D QD +K ++ FK V +V+ K V++ +E+ K+++ N + D+ A ++ + Sbjct: 45 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYD---------QDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDF---FEQEKNFLINYYNRIKDSCVKADKMTR 235
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_SCHPO (Sorting nexin-4 OS=Schizosaccharomyces pombe GN=snx4 PE=1 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11 Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 1 Query: 343 YLSVSVTDPVK-LGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681 +L VT+P K L ++SY +ITKTN + E V RR+SDFV L++ L + +PPLP K +E RFS FI R + L+ ++ R A HP L QS FL+ Sbjct: 17 FLQCLVTEPRKELQGSRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVKLQEILSRMNEDCVVPPLPAKHKLEYIKGGRFSDNFINRRAKLLNRYITRCALHPVLHQSPHFIAFLE 133
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_XENLA (Sorting nexin-33 OS=Xenopus laevis GN=snx33 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11 Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 1 Query: 355 SVTDPVKLGN--GVQAYISYRVITK-TNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 693 SV +P K G+++YISYR+ +N P Y RRY F WL +RL K+ I +P LPEK A RF +FI+ R++ L L+++ + SHP L Q + + FL +E Sbjct: 209 SVEEPTKQTKFKGIKSYISYRLTPDHSNSPVY--------RRYKHFDWLYNRLLHKFTVISLPHLPEKQATG--RFEEDFIQKRKRRLVLWMDHMTSHPVLSQYDGFQHFLGCQDE 314
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_HUMAN (Sorting nexin-33 OS=Homo sapiens GN=SNX33 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11 Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1 Query: 355 SVTDPVKLGN--GVQAYISYRVI-TKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 678 SV DP K G+++YISY++ T P Y RRY F WL +RL K+ I +P LPEK A RF +FIE R++ L L+++ + SHP L Q E + FL Sbjct: 233 SVEDPTKQTKFKGIKSYISYKLTPTHAASPVY--------RRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFL 333
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: VPS5_SCHPO (Vacuolar protein sorting-associated protein vps5 OS=Schizosaccharomyces pombe GN=vps5 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11 Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 1 Query: 352 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVI-RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 687 + V DP + +++ Y V T+ + + RRY+DF +L L + G IPP+PEK V RF EFIE RR L++ + +I++HP L+ K FL+A+ Sbjct: 204 IQVHDPHTVKEITKSHTVYSVSTRLEEHNQPSVSNVTVQRRYNDFAFLYQLLSNNHPGCIIPPIPEKQVVG--RFDDEFIEQRRAALEVMLRKISAHPVLRDDYSFKLFLEAE 314 The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bpback to top |