CK934258

Overview
NameCK934258
Unique NameCK934258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX5_HUMAN (Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 52/203 (25.62%), Postives = 90/203 (44.33%), Query Frame = 1
Query:  400 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLP------------------------EKSAVEKFRFSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLM-QIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLADAQKHAXRLVK 918
            + + V TKT  P +Q PE  V R++ DFVWL D L E   Y G+ IPP P                        E+ A  K    AE++ + ++ +   ++F+ R++SHP L +  +   FL+ D         QD    +K   ++    FK V     +V+    K V++    +E+ K+++    N + D+   A ++ +
Sbjct:   45 VKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLIETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYD---------QDLSVRRKNTKEMFGGFFKSVVKSADEVLFTGVKEVDDF---FEQEKNFLINYYNRIKDSCVKADKMTR 235          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX4_SCHPO (Sorting nexin-4 OS=Schizosaccharomyces pombe GN=snx4 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.029e-11
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 1
Query:  343 YLSVSVTDPVK-LGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 681
            +L   VT+P K L      ++SY +ITKTN   +   E  V RR+SDFV L++ L    +   +PPLP K  +E     RFS  FI  R + L+ ++ R A HP L QS     FL+
Sbjct:   17 FLQCLVTEPRKELQGSRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVKLQEILSRMNEDCVVPPLPAKHKLEYIKGGRFSDNFINRRAKLLNRYITRCALHPVLHQSPHFIAFLE 133          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_XENLA (Sorting nexin-33 OS=Xenopus laevis GN=snx33 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 44/116 (37.93%), Postives = 64/116 (55.17%), Query Frame = 1
Query:  355 SVTDPVKLGN--GVQAYISYRVITK-TNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 693
            SV +P K     G+++YISYR+    +N P Y        RRY  F WL +RL  K+  I +P LPEK A    RF  +FI+ R++ L L+++ + SHP L Q +  + FL   +E
Sbjct:  209 SVEEPTKQTKFKGIKSYISYRLTPDHSNSPVY--------RRYKHFDWLYNRLLHKFTVISLPHLPEKQATG--RFEEDFIQKRKRRLVLWMDHMTSHPVLSQYDGFQHFLGCQDE 314          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: SNX33_HUMAN (Sorting nexin-33 OS=Homo sapiens GN=SNX33 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.460e-11
Identity = 45/111 (40.54%), Postives = 61/111 (54.95%), Query Frame = 1
Query:  355 SVTDPVKLGN--GVQAYISYRVI-TKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 678
            SV DP K     G+++YISY++  T    P Y        RRY  F WL +RL  K+  I +P LPEK A    RF  +FIE R++ L L+++ + SHP L Q E  + FL
Sbjct:  233 SVEDPTKQTKFKGIKSYISYKLTPTHAASPVY--------RRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFL 333          
BLAST of CK934258 vs. ExPASy Swiss-Prot
Match: VPS5_SCHPO (Vacuolar protein sorting-associated protein vps5 OS=Schizosaccharomyces pombe GN=vps5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 38/113 (33.63%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  352 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVI-RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 687
            + V DP  +    +++  Y V T+           + + RRY+DF +L   L   + G  IPP+PEK  V   RF  EFIE RR  L++ + +I++HP L+     K FL+A+
Sbjct:  204 IQVHDPHTVKEITKSHTVYSVSTRLEEHNQPSVSNVTVQRRYNDFAFLYQLLSNNHPGCIIPPIPEKQVVG--RFDDEFIEQRRAALEVMLRKISAHPVLRDDYSFKLFLEAE 314          
The following BLAST results are available for this feature:
BLAST of CK934258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
SNX5_HUMAN2.029e-1125.62Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1[more]
SNX4_SCHPO2.029e-1138.46Sorting nexin-4 OS=Schizosaccharomyces pombe GN=sn... [more]
SNX33_XENLA3.460e-1137.93Sorting nexin-33 OS=Xenopus laevis GN=snx33 PE=2 S... [more]
SNX33_HUMAN3.460e-1140.54Sorting nexin-33 OS=Homo sapiens GN=SNX33 PE=1 SV=... [more]
VPS5_SCHPO5.903e-1133.63Vacuolar protein sorting-associated protein vps5 O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_D05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934258 ID=CK934258; Name=CK934258; organism=Citrus sinensis; type=EST; length=921bp
GGGGAAACCAAATCGTGTTGACTAAGAAAATACCTCAGGCTCAGGTTGTC
ACCGGTCGCTCTGGTGGTATCTCGCGCCTTAATTCGCAAGTTGCCGGTGC
CCAGCGCACTGCGCTCCACAGCGCATTTTAGACAACACCTCAATTTACAC
GCCTCACTACCAAACAAAAAGCTTCTGCTAGACTATTCAAATAGGAAGTT
ATTAATTCGTTTTCTCCTCAATCCTTCTTCTTCCGTTCTTCGGTTCCATT
CTCTAGTTCCCAATTAGATCATGATTAACACGGAGCAGCAGAGAAGCGCA
TCCGGATCGTCGCAGAGCCCTAGATCCCCGTCATCGCAGCCGTATTTATC
GGTGTCAGTAACCGATCCCGTGAAATTAGGCAATGGAGTACAAGCTTACA
TTTCCTATCGAGTCATCACCAAGACAAATTTTCCTGAATATCAAGGCCCC
GAGAAGATTGTTATTCGCCGTTACAGTGATTTTGTCTGGTTACGTGATCG
ACTTTTTGAGAAGTACAAGGGCATTTTCATTCCCCCTCTTCCTGAGAAGA
GTGCCGTAGAGAAGTTTCGTTTCAGTGCTGAATTTATTGAGATGAGACGC
CAAGGATTGGATTTGTTTGTCAATCGGATTGCTTCACATCCTGAGCTGCA
GCAAAGTGAGGATTTAAAAACATTTTTGCAGGCAGACGAAGAGACAATGG
AGAGATTAAGGTCTCAAGACACTGGTTATTTCAAAAAGAAGCCAGCTGAT
TTGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGTGATGTTGTTCT
TGGAAAAGAGAAGCCAGTTGAAGAATCTAATCCTGAATACGAGAAGCTGA
AACACTACATTTTTGAGCTGGAAAACCACTTGGCTGATGCTCAGAAACAT
GCNNNTCGTCTTGTCAAAAGN
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