CK934264

Overview
NameCK934264
Unique NameCK934264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 67/180 (37.22%), Postives = 105/180 (58.33%), Query Frame = 1
Query:   94 LPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFSSKKELFALLC-HPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSEVAVLRTSNWLEIEGKIKTKMLSQNTMYGAYLIMKISDRAYGLDSEAAEISIEIGGR 630
            LPEECV+ + S T P DAC           A+ SDI+W+KF+P ++  ++S+S     F SKKEL+  LC    LID GK S  +EK++ K+  ++SA  L+I W ++P  W W+   ++RF  VA L      EI G+I ++++S  T Y AY++ K  +  YG ++ A E+ + + G+
Sbjct:   39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQS-RAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGVVGQ 217          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: PP2B5_ARATH (F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.883e-28
Identity = 72/199 (36.18%), Postives = 106/199 (53.27%), Query Frame = 1
Query:   85 FNVLPEECVATVFSLTC-PLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFSSKKELFALLCHPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSEVAVLRTSNWLEIEGKIKTKMLSQNTMYGAYLIMKISDRAYGLDSEAAEISIEIGGRQASKGKAYLGSKQKSN 678
            F+ LP++C+A + S T  P DA              +SD +W+KFLP   P+ VS       FSSKKEL+  LC PF    GK+SF+L+K+SGKK  +LSA+ L I+   NP YW W+S+ ESRF EV  L   +  +I G + T+++S  T Y AY++   +    G  +   +  +       SK      SK++ +
Sbjct:   34 FDDLPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPP--PDYVSLLPKSRVFSSKKELYFALCDPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIPESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSPIQAGVGFQRHGMSKTFIRFDSKKRQD 230          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 5.399e-27
Identity = 68/183 (37.16%), Postives = 106/183 (57.92%), Query Frame = 1
Query:   94 LPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFSSKKELFALLCH-PFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIY-WSWVSMQESRFSEVAVLRTSNWLEIEGKIKTKMLSQNTMYGAYLIMKISDRAYGLDSEAAEISIEIGGRQA 636
            LPE C++ + S T P DAC           A+ SDI+W+KFLP+D+  +++ S     FSSKKEL+  LC+ P LI+ GK+S  LEK+SGK+  +LSA A++++  ++    + W+   ESRF  VA LR +   E   ++ T++LS  T Y  Y++ K +D   G    + E  + I G ++
Sbjct:   27 LPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPS---RVFSSKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEAVVGIVGEES 206          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.053e-25
Identity = 67/185 (36.22%), Postives = 100/185 (54.05%), Query Frame = 1
Query:   94 LPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFSSKKELFALLC-HPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSE-VAVLRTSNWLEIEGKIKTKMLSQNTMYGAYLIMKISDRAYGLDSEAAEISIEIGGRQASK 642
            LPEEC++ + S T P DAC           A+ SDI+W+KF+P ++  ++S+S     FSSKKELF  LC    LI+  K    +EK++GK+  +LSA AL++   S    W W++   S + E V  L T+ W EI  +  T+ LS  T Y  Y++   +D  YG    A E  + + G + S+
Sbjct:   43 LPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLSRSQH---FSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITNPVSAWLETVPELLTTRWFEIRCRTNTRFLSPRTRYSVYIVFLKADICYGFAYVAMEAVVRMVGHELSE 221          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: PP2B3_ARATH (F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   85 FNVLPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFSSKKELFALLCH-PFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNP 417
            F+ LPE C++ + S T P DAC           A+ SD +W+KFLP D+  +V +S     F SKKEL   LC  P LI+ GK SF L+K+SG+K  +LS + + I+W ++P
Sbjct:   13 FDGLPENCISNIISFTTPRDACFAASVSKAFESAVQSDSVWEKFLPLDYSSLVPES---RVFLSKKELCFSLCRVPLLIEGGKKSFWLDKTSGEKCIMLSPKGMVISWVNSP 121          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.128e-16
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 1
Query:   94 LPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFS-SKKELFALLCHPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSEVAVLRTSNWLEIEGKIK 513
            +PE CVA VF    P + C           A  SD +W+K LP ++ +++         S SKK++FA+L  P   D       +++ +G+    +SAR +SIT   +  YW+W+  +ESRF  VA L+   W E++G ++
Sbjct:   24 IPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVR 164          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 50/153 (32.68%), Postives = 70/153 (45.75%), Query Frame = 1
Query:   79 CYFNVLPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSK--------SVSPLAFSSKKELFALLCHPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSEVAVLRTSNWLEIEGKIK 513
            C    +PE C+  +F    P + C           A  SD +W+  LPS++  +V +         V       KKE++A LC P L D G     L+K SGK    +S +A+ IT   +  YW  +S  ESRF  +  LR   WLE  GKI+
Sbjct:   19 CGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIR 171          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 45/147 (30.61%), Postives = 73/147 (49.66%), Query Frame = 1
Query:   94 LPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFSS--KKELFALLCHPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSEVAVLRTSNWLEIEGKIKTKMLS 528
            LPE CVA + +   P + CR          A  +D IW+  LP+++  I  K    +  +   KK+L+A L  P L D G     ++K++G+    +S++AL IT   +  YWS +   ESRF   A ++   W E+ G+ + +  S
Sbjct:   28 LPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPS 174          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.202e-12
Identity = 41/140 (29.29%), Postives = 68/140 (48.57%), Query Frame = 1
Query:   94 LPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFS-SKKELFALLCHPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSEVAVLRTSNWLEIEGKI 510
            LPE CVA +     P++ CR          A  +D +W+  LP D+  I+ K +     +  K+++F  L      D G     ++K +G      SA+ LSIT   +  YWS +   +SRF+ VA ++   W +++G+I
Sbjct:   29 LPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEI 168          
BLAST of CK934264 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 42/140 (30.00%), Postives = 68/140 (48.57%), Query Frame = 1
Query:   94 LPEECVATVFSLTCPLDACRXXXXXXXXXXAMDSDIIWDKFLPSDWPEIVSKSVSPLAFS-SKKELFALLCHPFLIDAGKISFKLEKSSGKKSYILSARALSITWSSNPIYWSWVSMQESRFSEVAVLRTSNWLEIEGKI 510
            LPE CVA +     P++ CR          A  +D +W+  LP ++ +++ K +     +  K+ L+A L      D       ++K +      +SA+ LSIT   +  YWS +   ESRFS VA L+   W E++G+I
Sbjct:   31 LPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEI 170          
The following BLAST results are available for this feature:
BLAST of CK934264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PP2B8_ARATH1.518e-2937.22Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
PP2B5_ARATH4.883e-2836.18F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP... [more]
SKIP3_ARATH5.399e-2737.16F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]
PP2B7_ARATH5.053e-2536.22F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP... [more]
PP2B3_ARATH3.878e-1741.96F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP... [more]
P2A15_ARATH1.128e-1631.91F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH3.283e-1632.68F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH8.087e-1530.61F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH2.202e-1229.29F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A12_ARATH3.756e-1230.00F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934264 ID=CK934264; Name=CK934264; organism=Citrus sinensis; type=EST; length=740bp
GGGGAGGGACTCTGATGAACAAAGAATTAAAGCTATACGTATTTCTGAAA
AACAATGGAAGCGAATTTCGATACCAATTGCTACTTCAACGTGTTGCCAG
AAGAGTGCGTTGCCACTGTTTTCTCCCTCACTTGTCCGTTAGATGCATGC
AGATCATCGCTTGTTTCTTCTTCGTTTCGATCGGCCATGGACTCCGACAT
TATCTGGGACAAGTTCTTGCCCTCAGATTGGCCCGAGATCGTCTCCAAAT
CAGTCTCTCCCCTCGCATTTTCCTCCAAGAAAGAGCTCTTCGCTCTCCTT
TGCCACCCTTTTCTCATTGATGCCGGCAAGATCAGCTTCAAGTTAGAGAA
ATCATCAGGCAAAAAATCTTATATTTTGTCTGCTAGAGCTCTTAGTATAA
CGTGGAGTAGCAATCCAATTTATTGGAGCTGGGTGTCCATGCAGGAATCA
AGATTTTCAGAAGTTGCGGTGCTGAGAACATCAAATTGGCTGGAAATTGA
AGGCAAGATCAAGACCAAAATGTTGTCACAAAACACGATGTATGGAGCTT
ATCTTATAATGAAAATAAGTGATAGAGCATACGGGCTTGATTCAGAAGCC
GCTGAAATTTCAATTGAAATTGGTGGTCGTCAGGCGTCCAAAGGCAAGGC
TTATTTGGGCAGCAAGCAAAAAAGTAATTCATCAGTGCTAGTGGAGGGCA
TGGAAATGATGGTGACATCAAAGTTGATAGATACAGACGG
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