CK934265

Overview
NameCK934265
Unique NameCK934265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 61/174 (35.06%), Postives = 112/174 (64.37%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY------NMHSSNISKLNHPSLELQLENSKYLSLSREIAD-KSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            M R KI+I++I+N T RQVTF KRR GL KKA ELSVLCDAEV +I+FS+ G+L+E +++S+K  + RY        +S  ++++N  +   Q E+SK   L ++I+  ++   R + G+ ++ +++ +L+ +E  LE+G++++   K + +  E+  ++++  +L  +N  L+
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVN--AQHYQQESSK---LRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLR 169          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 64/166 (38.55%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN-MHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKN 675
            M R KI+I++I+N + RQVT+SKRR G+ KKA+E+SVLCDA V VIIF+++GK+ E SS+S+ DI+ +Y+ +    +    H +L+ ++   K  + + +I     +LR ++GED+  L   EL  LE  LE GL+ +   +     NE+  + RK  + +EE ++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLLDAKHENLDNEINKVKKDNDNMQI-----ELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQ-----NEVLRMMRKKTQSMEEEQD 156          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.265e-24
Identity = 68/171 (39.77%), Postives = 99/171 (57.89%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLN---HPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            M R ++++++I+    RQVTF+KRR GL KKA ELSVLCDAEV +IIFS  GKL+E  SSSSM   + RY   +    + N     +LE+     +YL L        R  R + GEDL  L  +EL+ LE  L+  L ++  T+   ++++++  +RK   L E N+ LK
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEIS-SQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLK 170          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.079e-23
Identity = 64/169 (37.87%), Postives = 101/169 (59.76%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE-SSSSSMKDIIARYNMHSSNISKLNHP-SLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNLK 681
            M R K+ +++I+N  +RQVTF+KRR GL KKA ELS+LCDAEV +++FS  G+L++ SSSS+M   + RY  +         P S E+Q    +Y++L   +    +  R + GEDL  L   EL+ LE+ + + L ++   K   +++E+  L+RK   L + N+ LK
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLK 169          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 64/171 (37.43%), Postives = 100/171 (58.48%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNH---PSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            M R KI++++I+N T+RQVTFSKRR GL KK  ELSVLCDA++G+I+FS  GKL E  +   SMK II RY      + ++ +   P  +      +   +  E  +    L++ +G+DL  +  EEL  LE +L+Q L++V   K + +  ++  L+R    L +EN+ +
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEM 171          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.357e-23
Identity = 62/166 (37.35%), Postives = 104/166 (62.65%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYN-MHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKN 675
            M R KI+I++I+N + RQVT+SKRR G+ KKA+E+SVLCDA V VIIF+++GK+ E SS+S+ DI+ +Y+ +    +    H +L+ ++   K  + + +I     +LR ++GED+  L   EL  LE  L+ GL+ +   +     N++  + RK  + +EE ++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTGRRLWDAKHENLDNEINKVKKDNDNMQI-----ELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQ-----NDLLRMMRKKTQSMEEEQD 156          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.559e-22
Identity = 62/165 (37.58%), Postives = 101/165 (61.21%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNHPSLEL-QLENS---KYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKL 657
            M R K+++R+I+N  +RQVTFSKRR GL KKA E++VLCD +V  I+FSA G LF   SS ++M+ I+ +Y+ H   +S+ N+   E  +LE S    ++ L   I    +  R + G++L  LT++++Q LE  ++  L+ +   K   +M + + LE+K  +L
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHEL-LSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLNNIRSRKEKLLMEKNTILEKKITEL 164          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 63/171 (36.84%), Postives = 100/171 (58.48%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSS--MKDIIARYNMHSSN--ISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGL-TIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            M + KI++++I++ T RQVTFSKRR G  KKA EL+VLCDA+VGV++FS  GKLF+  S    + ++  RY + + N  + + N    ++ +E ++   L  EI      LR+  GEDL  + T++EL  L+  LE  LS+V   K + +  ++  + R    + E+N  L
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNTRLQETNRDDEQMVMEITR---LRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFL 168          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.535e-22
Identity = 64/173 (36.99%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREI-------ADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            MAR KI+I++I+N T RQVT+SKRR GLFKKA EL+VLCDA+V +I+ S+TGKL E  S S+          +  +  L   ++ + L NS Y  +  ++        +  +++RQ  GE L+ L  E+L+ L   ++  L  + + K   I N+I T ++K   + E ++NL
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSIT---------TKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNL 164          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.923e-22
Identity = 67/168 (39.88%), Postives = 98/168 (58.33%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            MAR KI+I++I+N T RQVT+SKRR GLFKKA EL+VLCDA V +I+FS++ KL E  S +++ K+I+  Y    S++         +Q    K L  +R +     Q++Q  GE L  L I+EL+ LE  +E     V + K   + N+I T ++K     +  KNL
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQT-ISDVDVWATQYERMQETKRKLLETNRNL---RTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNL 164          
The following BLAST results are available for this feature:
BLAST of CK934265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MADS3_ORYSJ6.328e-2435.06MADS-box transcription factor 3 OS=Oryza sativa su... [more]
FBP1_PETHY8.265e-2438.55Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
AGL9_SOLLC8.265e-2439.77Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MAD34_ORYSJ1.079e-2337.87MADS-box transcription factor 34 OS=Oryza sativa s... [more]
DEF21_ANTMA2.405e-2337.43MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
GLOB_TOBAC5.357e-2337.35Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
MAD20_ORYSJ1.559e-2237.58MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD30_ORYSJ3.473e-2236.84MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MADS1_PETHY4.535e-2236.99Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
AP3_ARATH5.923e-2239.88Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004261_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934265 ID=CK934265; Name=CK934265; organism=Citrus sinensis; type=EST; length=681bp
GCGGGGAAAAATAAAGAAAAAGAAATTGAANNNACTGTTTTGCTATAAAA
GGGAAGGCAACCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCC
GTCTCTATTTCTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGA
TCAGTCCTGAACCAGGCCTCCTATTAGATTATGGCGAGAGAGAAGATCAA
GATCAGGAAGATTGATAACATAACAGCGAGACAAGTGACTTTCTCAAAGA
GAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTTTCTGTTCTTTGTGAT
GCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGGCAAGCTCTTTGAGTC
CTCCAGCTCCAGCATGAAGGACATAATTGCAAGGTACAACATGCATTCAA
GTAACATCAGCAAATTGAATCATCCATCTCTTGAACTGCAGTTGGAGAAT
AGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGATAAGAGCCGTCAACT
AAGGCAGATGAGAGGAGAGGATCTTCATGGATTGACTATTGAGGAACTCC
AGCACCTTGAAACAATGCTTGAACAGGGACTTAGCCGTGTGCTCCAGACA
AAGGGTGACCGGATTATGAATGAGATCTCTACACTTGAAAGGAAGGGAGC
TAAGCTGCTGGAGGAGAACAAGAATCTAAAG
back to top