CK934265

Overview
NameCK934265
Unique NameCK934265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 62/165 (37.58%), Postives = 100/165 (60.61%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFE--SSSSSMKDIIARYNMHSS-NISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEE 666
            M R KI+I++I+N + RQVT+SKRR G+ KKA+E++VLCDA+V +IIF  +GK+ E  S S+++ D++  Y   S   +    H +L  +++  K     +E  +   +LR ++GED++ L  +EL  LE  L  GLS +   +     +EI  + RK  ++LEE
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIK-----KENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQ-----SEILRMVRKNDQILEE 155          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 58/145 (40.00%), Postives = 89/145 (61.38%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMK--DIIARYNMHSSNISKLNHPSL---ELQLENSKYLSLSREIADKSRQ---LRQMRGEDLHGLTIEELQHLETMLEQGLSRV 591
            M R +++++KI+N T RQVTFSKRR GL KKA EL++LCDA++GVI+FS TGK++E SS   +  +I  RY         L  PS    E+ ++      ++R   + +R    +RQ  G+DL  LT++++ +LE  +E  L +V
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPWRIANIFDRY---------LKAPSTRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQDVSNLEQQIEFSLYKV 136          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 61/168 (36.31%), Postives = 95/168 (56.55%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKL--FESSSSSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            M R K++IRKI+N T RQVTFSKRR G+ KKA+EL+VLCDA+V +++ S+T KL  + S   S+K +   Y      +         +Q ++ K L L+  +    R++ +  G DL GLT+ EL  L+  +E+ + ++   K   I N+  T  +K   L E + +L
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEY-QKIEGVDLWRKQWERMQEQHRKVLELNSLL---RREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 56/142 (39.44%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  259 GLFKKAEELSVLCDAEVGVIIFSATGKLFESSSS--SMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            GL KKA EL++LCDA++GVIIFS++GK+FE SS   SM++II RY   S N +    P  + Q    +   +  EI      +R   GEDL  LT+ E+  LE  LE  +++V   K   +  ++  L RK   L E+N+ L
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCA----PVYDNQQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNREL 139          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 59/170 (34.71%), Postives = 93/170 (54.71%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISK----LNHPSLELQLENSKYLSLSREIADKSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLERKGAKLLEENKNL 678
            M R KI+I++I+N   R VTFSKRR GL KKA+E++VLCDA+V +IIF++ GK+ +    SM D+ A  + +     K      H +L  +++  K     +E      +LR ++GED+  L ++ L  +E  +E GL +V     D  M  + +  R    + EE + L
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSM-DLGAMLDQYQKLSGKKLWDAKHENLSNEIDRIK-----KENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKV----RDHQMEILISKRRNEKMMAEEQRQL 160          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.846e-15
Identity = 56/159 (35.22%), Postives = 86/159 (54.09%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSS---SSMKDIIARYNMHSSNISKLNHPSLELQLENSKYLSLSR--EIAD-KSRQLRQMRGEDLHGLTIEELQHLETMLEQGLSRVLQTKGDRIMNEISTLE 639
            M R + +I++I+N T RQ TF KRR GLFKKA EL+VLCDA++ +++FSA+GKL+   S    S+++ + RY           H  +   +   +   L +   + D   +QLR M  +D    T+  L+ LE  LE  + +V   K  +I  EI  L+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERY-------EATTHTKVWADIRQERRAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQ 152          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHSSNISK 414
            M R KI I KI N   RQ TF+KR+ GL KKA ELS+LCD E+ +I+FS+  KLF+ SS  M  ++ RY  ++ N  K
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRYTDNTDNTRK 80          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARY----NMHSSNISKLN---HPSLELQLENSKYLSLSREIADKSRQLRQMRGEDL 525
            + R+KI + KI   + RQVTFSKRR GLFKKA EL  LC AE+G+I+FS   K F     S++ ++ RY    NM  +   +L      S EL ++ +  LS   E   K + + +MR E +
Sbjct:   62 IGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMSLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKESV 183          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 399
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++T KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYN 73          
BLAST of CK934265 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = 1
Query:  181 MAREKIKIRKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGVIIFSATGKLFESSSSSMKDIIARYNMHS 399
            M R+KI+I +I +   RQVTF+KR+ GL KKA ELSVLCD E+ +IIF++T KLF+ +S+ M  ++ +Y  ++
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKYTEYN 73          
The following BLAST results are available for this feature:
BLAST of CK934265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
MADS2_PETHY2.489e-2037.58Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD31_ORYSJ9.457e-2040.00MADS-box transcription factor 31 OS=Oryza sativa s... [more]
CMB2_DIACA2.107e-1936.31MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
AP32_ASAEU1.783e-1839.44MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
PIST_ARATH3.042e-1834.71Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD32_ORYSJ1.846e-1535.22MADS-box transcription factor 32 OS=Oryza sativa s... [more]
SRFC_DICDI9.159e-1550.00Serum factor response C OS=Dictyostelium discoideu... [more]
AGL61_ARATH7.754e-1439.34Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]
MEF2C_PONAB3.848e-1349.32Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG3.848e-1349.32Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934265 ID=CK934265; Name=CK934265; organism=Citrus sinensis; type=EST; length=681bp
GCGGGGAAAAATAAAGAAAAAGAAATTGAANNNACTGTTTTGCTATAAAA
GGGAAGGCAACCTTTCCTTTCTCGAACACACAATCCAAGTCTGTCTCTCC
GTCTCTATTTCTTCTCACTTTCTGTAATTGGTGGCTTTAGGTTACTGTGA
TCAGTCCTGAACCAGGCCTCCTATTAGATTATGGCGAGAGAGAAGATCAA
GATCAGGAAGATTGATAACATAACAGCGAGACAAGTGACTTTCTCAAAGA
GAAGACGAGGCCTTTTCAAGAAAGCAGAAGAGCTTTCTGTTCTTTGTGAT
GCTGAGGTTGGAGTCATCATTTTCTCTGCTACTGGCAAGCTCTTTGAGTC
CTCCAGCTCCAGCATGAAGGACATAATTGCAAGGTACAACATGCATTCAA
GTAACATCAGCAAATTGAATCATCCATCTCTTGAACTGCAGTTGGAGAAT
AGCAAGTATCTCAGTTTGAGCAGGGAAATTGCTGATAAGAGCCGTCAACT
AAGGCAGATGAGAGGAGAGGATCTTCATGGATTGACTATTGAGGAACTCC
AGCACCTTGAAACAATGCTTGAACAGGGACTTAGCCGTGTGCTCCAGACA
AAGGGTGACCGGATTATGAATGAGATCTCTACACTTGAAAGGAAGGGAGC
TAAGCTGCTGGAGGAGAACAAGAATCTAAAG
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