CK934268

Overview
NameCK934268
Unique NameCK934268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934268_ssr434 microsatellite CK934268_ssr434:434..445. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9154 contig Csv1_Contig9154:679..1170. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934268 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.131e-13
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   28 VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 231
            V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   ++L+ IGF + +IGK
Sbjct:  395 VTISKDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464
The following BLAST results are available for this feature:
BLAST of CK934268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_MOUSE1.131e-1352.86UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C08 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934268 ID=CK934268; Name=CK934268; organism=Citrus sinensis; type=EST; length=494bp
GGGATGAGTCCCACCACGGTGAAGCAAGTGAGCGTGGTCTGGGATGCCTA
TGAAGCAACAAAAGATGCCCATGGTGTCTGCATCTTGACCGAGTGGGATG
AGTTCAAGACTCTTGACTATCAGAGGATATATGACAACATGCAGAAACCA
GCATTCGTGTTTGATGGCAGGAATGTTGTTGATGCCAACAAGTTGAGGGA
GATTGGTTTCATCGTGTACTCCATTGGTAAGCCACTCGATCCATGGTTGA
AGGACATGCCGGCTGTTGCATAAAAGAGACGCCAATGGGCATGCTCGTGT
CATCGGGCATCAGATTATAGATGATGAAGAAGTCAGCTCAATTCTTTACT
ATATTTTGATGAGTTTTTGTTGTGCCTTTGCTTTTGCTAAGAGGCTCTAT
GTTTTTGCCTTATCACTTTATTTGATGATACTACTGTCTGTCTGTTACTT
GTTTGTTAGAAGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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