CK934269

Overview
NameCK934269
Unique NameCK934269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = 2
Query:   53 VPISSFL----LMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            VP++S L    LM++     + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRS GFGF+ F DE +   AI  M+G+ L+GR+I VN A
Sbjct:   21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG L+W   D +L E FS  G+++++K++ DR++GRS GFGF+T+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            S D   R +VG L+W   D +L E FS  G+++++K++ DR++GRS GFGF+T+   K + DAI+ +NG +LDGR+I V+ A+
Sbjct:  203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   98 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            +R +VG + W   D+ L + FS +G ++ ++++ DRETGRS GFGF+T   E  M DAI  ++GQ+LDGR I VN A+
Sbjct:  230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 2
Query:   98 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            FR +VG L W   +  L + FS +G ++E++++ DRETGRS GFGF+T  D   + +AI  ++GQNL+GR I VN A+
Sbjct:  244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 2
Query:   95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            E + FVGGL + TT+ SL + FS YG + E  ++ DRE+ RS GFGF+TF + +  +DA+  MNG+++DGR I V++A
Sbjct:    5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            A  E + FVGGL++ T + SL + FS YG I E  ++ DRET RS GFGF+TF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            A  E + FVGGL++ T + SL + FS YG I E  ++ DRET RS GFGF+TF +    +DA+  MNG+++DGR I V++A
Sbjct:    2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            R +VG L W    S L + FS +G ++ +++++DRETGRS GFGF+T   E  + DAI  ++GQ LDGR + VN A+
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2
Query:   98 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            +R +VG + W   D+ L + FS +G ++ ++++ DRE+GRS GFGF+T   E  M +AI  ++GQ LDGR I VN A+
Sbjct:  191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268          
The following BLAST results are available for this feature:
BLAST of CK934269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
GRP2_ARATH1.710e-1847.92Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
ROC2_NICSY1.225e-1644.5829 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL2.090e-1644.5831 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC4_NICSY3.566e-1646.1531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_ARATH1.037e-1546.1531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
CIRBP_XENTR1.355e-1547.44Cold-inducible RNA-binding protein OS=Xenopus trop... [more]
CIRBP_PONAB2.311e-1548.15Cold-inducible RNA-binding protein OS=Pongo abelii... [more]
CIRBP_HUMAN2.311e-1548.15Cold-inducible RNA-binding protein OS=Homo sapiens... [more]
ROC1_SPIOL3.942e-1545.4528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC3_NICSY5.149e-1543.5928 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934269 ID=CK934269; Name=CK934269; organism=Citrus sinensis; type=EST; length=585bp
GGGGATCCNNNNGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCACAGGATTTGGATTCATTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CCGAGGTGGCGGCGGTGGATATGGTGGCCGCCATGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGAAACTAGGGTTT
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