CK934269
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.710e-18 Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = 2 Query: 53 VPISSFL----LMASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 VP++S L LM++ + F+GGL+W T D+SL +AF+ +GD++++K+I DRETGRS GFGF+ F DE + AI M+G+ L+GR+I VN A Sbjct: 21 VPVTSMLGSLRLMST-----KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.225e-16 Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2 Query: 83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 S D R +VG L+W D +L E FS G+++++K++ DR++GRS GFGF+T+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAE 284
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.090e-16 Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 2 Query: 83 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 S D R +VG L+W D +L E FS G+++++K++ DR++GRS GFGF+T+ K + DAI+ +NG +LDGR+I V+ A+ Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAE 285
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.566e-16 Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 2 Query: 98 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 +R +VG + W D+ L + FS +G ++ ++++ DRETGRS GFGF+T E M DAI ++GQ+LDGR I VN A+ Sbjct: 230 YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.037e-15 Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 2 Query: 98 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 FR +VG L W + L + FS +G ++E++++ DRETGRS GFGF+T D + +AI ++GQNL+GR I VN A+ Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.355e-15 Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 2 Query: 95 EFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 E + FVGGL + TT+ SL + FS YG + E ++ DRE+ RS GFGF+TF + + +DA+ MNG+++DGR I V++A Sbjct: 5 EGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 A E + FVGGL++ T + SL + FS YG I E ++ DRET RS GFGF+TF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.311e-15 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 2 Query: 86 ADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328 A E + FVGGL++ T + SL + FS YG I E ++ DRET RS GFGF+TF + +DA+ MNG+++DGR I V++A Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 82
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15 Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 2 Query: 101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 R +VG L W S L + FS +G ++ +++++DRETGRS GFGF+T E + DAI ++GQ LDGR + VN A+ Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.149e-15 Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = 2 Query: 98 FRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331 +R +VG + W D+ L + FS +G ++ ++++ DRE+GRS GFGF+T E M +AI ++GQ LDGR I VN A+ Sbjct: 191 YRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268 The following BLAST results are available for this feature:
BLAST of CK934269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934269 ID=CK934269; Name=CK934269; organism=Citrus sinensis; type=EST; length=585bpback to top |