CK934269

Overview
NameCK934269
Unique NameCK934269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2135 contig Csv1_Contig2135:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 2
Query:   89 DVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            D   + +V  L+WA T   L +AF+     + +K+I DR +GRS GFGFITF   ++M  A++ MN   L+GR + +N A
Sbjct:  214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GF+T  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GF+T  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GF+T  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GF+T  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTDSSL + F  +GDI E+ +I DR+TG+S G+GF+T  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 2.644e-11
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            M  AD   + F+GGL   T + +L   F  YG I+E  ++ DRET +S GF F+TF      + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKVAQA 84          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RBY1B_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member B OS=Mus musculus GN=Rbmy1b PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 2
Query:   77 MASADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 331
            MA  D   + F+GGL   T   +L E F  +G +    ++ DRET +S GF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETDQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEMNGVILDGKRIKVKQAR 85          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+S G+GF+T  D  +   A +  N   +DGR   VN A
Sbjct:   35 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
BLAST of CK934269 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 2
Query:  101 RCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSTGFGFITFRDEKSMRDAIEGMNGQNLDGRNITVNEA 328
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+S G+GF+T  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
The following BLAST results are available for this feature:
BLAST of CK934269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ROC5_NICSY2.644e-1140.0033 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM38_CHICK2.644e-1146.05RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR2.644e-1146.05RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK2.644e-1146.05RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA2.644e-1146.05RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA2.644e-1146.05RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRGT_HUMAN2.644e-1140.48RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
RBY1B_MOUSE5.891e-1138.82RNA-binding motif protein, Y chromosome, family 1 ... [more]
RBM38_HUMAN5.891e-1144.74RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]
RBM38_XENTR7.694e-1144.74RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934269 ID=CK934269; Name=CK934269; organism=Citrus sinensis; type=EST; length=585bp
GGGGATCCNNNNGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCT
TAGTCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTT
CGGTGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCA
TGAGGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGATTATTAACG
ATCGCGAGACTGGAAGATCCACAGGATTTGGATTCATTACCTTCCGCGAT
GAGAAGTCGATGAGGGACGCAATCGAAGGCATGAACGGCCAGAATCTGGA
CGGCCGTAACATAACAGTCAACGAGGCCCAGTCCCGTGGAAGCGGTGGCG
GTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTGGTGGATATGGAGGTGGT
GGACGCCGTGAAAGTGGTGGTGGCGGTGGATACGGTGGGAGCCGCGGATA
CCGAGGTGGCGGCGGTGGATATGGTGGCCGCCATGAAGGTGGTTACAGCC
GTGACGGTGGATATGGCGGTGATGGTGGTTCCCGATACTCAAGGAGCGGT
GCTTCTGATGGCGGTAGCTGGAGAAACTAGGGTTT
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