CK934282

Overview
NameCK934282
Unique NameCK934282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRC14_ORYSJ (Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 47/100 (47.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQ-LGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V ++ +ER VVIF+ SSC M H +  L C  G N  V+ELD+ P G+++ER L++ LG  P VP VFIG +LVGG  ++MSL +  +L  +L  AGA+W+
Sbjct:    4 VMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLLGRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXS9_ARATH (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana GN=GRXS9 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLL 429
            V RM +E+ VVIFS+SSC MS+A++ L    G +PTV+E+D+ P  R+IE+ L++LGC   VPA+F+G +L+G   +VMSL ++  L  L+
Sbjct:    4 VVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLGCSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLV 94          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.227e-17
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELV-QLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V R+ ++R VVIF  S+C M H +K L    G +  V+E+D+ PNG+ +ER L   +G  P VPAVFIG +LVG   QVMSL +  +L  LL  AGA+W+
Sbjct:    5 VARLSSQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGALWL 104          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQL-----GCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V R+ +E  VV+FS SSC M HA+K L C  G +P V+ELD  P GR +ER L +L          VP VFIG +LVG   +VM+  +   L  LL  AGA+W+
Sbjct:   32 VERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGALWL 135          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRS11_ARATH (Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana GN=GRXS11 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLL 429
            V RM +E+ VVIF++SSC +S+A++ L    G NP ++E+D+ P  R+IE+ L++LGC   VPAVFIG +LVG   +VMS+ +++ L  L+
Sbjct:    4 VMRMSSEKGVVIFTKSSCCLSYAVQVLFQDLGVNPKIHEIDKDPECREIEKALMRLGCSKPVPAVFIGGKLVGSTNEVMSMHLSSSLVPLV 94          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRC12_ARATH (Putative glutaredoxin-C12 OS=Arabidopsis thaliana GN=GRXC12 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.733e-17
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQL-GCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V  + +E+  VIF++SSC M H+IK L    GA+P ++ELD+ P G  +ER L ++ G  P VPAVF+G + VG AK V+S  V   L  +L  + AIW+
Sbjct:    4 VRDLASEKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPQGPDMERALFRVFGSNPAVPAVFVGGRYVGSAKDVISFHVDGSLKQMLKASNAIWL 103          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRC11_ARATH (Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 1
Query:  172 AERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLG-CQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            +++  VIF++SSC M H+IK L    GA+P ++ELD+ P GR++ER L  LG   P VPAVF+G + +G AK ++S  V   L  +L  A AIW+
Sbjct:    9 SKKAAVIFTKSSCCMCHSIKTLFYELGASPAIHELDKDPEGREMERALRALGSSNPAVPAVFVGGRYIGSAKDIISFHVDGSLKQMLKDAKAIWL 103          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRC10_ORYSJ (Glutaredoxin-C10 OS=Oryza sativa subsp. japonica GN=GRXC10 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICS-FGANPTVYELDEIPNGRQIERELVQL-----GCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V ++ +ER VV+F+ S+C M HA+ +L+    G N  V+ELD+ P GR +EREL +      G    +PAVF+G  LVGGA +VMSL +  +L  +L  AGA+W+
Sbjct:    4 VAKLASERAVVVFTASNCGMCHAVTSLLVGELGVNAAVHELDKDPRGRDMERELARRLNGGGGGGRALPAVFVGGNLVGGANRVMSLHLAGELVPMLKNAGALWL 108          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRC13_ARATH (Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.947e-16
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQLGCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLL 429
            V RM +E+ VVIF++SSC + +A++ L       PT++E+D  P+ R+IE+ L++LGC   VPAVF+G +LVG   +VMSL ++  L  L+
Sbjct:    4 VMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALLRLGCSTAVPAVFVGGKLVGSTNEVMSLHLSGSLVPLI 94          
BLAST of CK934282 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.733e-16
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  157 VTRMVAERPVVIFSRSSCSMSHAIKALICSFGANPTVYELDEIPNGRQIERELVQL--GCQPIVPAVFIGQQLVGGAKQVMSLQVTNQLSHLLIRAGAIWI 453
            V RM +   VV+FS S C M H +K L+   G  P VYELD++     I+  L QL    QP VP VF+G +L+GG ++VM+  +   L  LL +AGA+W+
Sbjct:   92 VARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGALWL 192          
The following BLAST results are available for this feature:
BLAST of CK934282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GRC14_ORYSJ2.920e-1947.00Putative glutaredoxin-C14 OS=Oryza sativa subsp. j... [more]
GRXS9_ARATH3.229e-1847.25Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana ... [more]
GRXC2_ORYSJ1.227e-1747.00Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GRXC5_ORYSJ1.602e-1745.19Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRS11_ARATH2.093e-1746.15Monothiol glutaredoxin-S11 OS=Arabidopsis thaliana... [more]
GRC12_ARATH2.733e-1744.00Putative glutaredoxin-C12 OS=Arabidopsis thaliana ... [more]
GRC11_ARATH3.570e-1745.26Glutaredoxin-C11 OS=Arabidopsis thaliana GN=GRXC11... [more]
GRC10_ORYSJ6.089e-1743.81Glutaredoxin-C10 OS=Oryza sativa subsp. japonica G... [more]
GRC13_ARATH3.947e-1643.96Glutaredoxin-C13 OS=Arabidopsis thaliana GN=GRXC13... [more]
GRXC9_ORYSJ6.733e-1642.57Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004261_C02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IVF_C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934282 ID=CK934282; Name=CK934282; organism=Citrus sinensis; type=EST; length=703bp
GGGGACAGCNNNCAAAGCCTAATCCTCAACACACACTACCTAGTAGTCCG
ATCTCATATGTAGAAAACTTGAATTAATTTGCGTTAATTTTCTCACAATA
TACTTGTTTTGTTTTAGTTAGTGGTAAATAAACATCAATAAAGAATGGAG
ACGGTGGTGACAAGGATGGTAGCAGAAAGGCCAGTGGTGATATTCAGCAG
GAGCTCATGCTCGATGAGCCATGCCATAAAGGCACTGATCTGCAGCTTCG
GGGCGAATCCAACGGTATACGAGCTAGATGAAATTCCAAATGGACGGCAG
ATAGAGAGGGAGCTGGTGCAGCTTGGGTGTCAACCGATTGTACCGGCAGT
GTTCATTGGCCAGCAGCTTGTTGGTGGTGCCAAGCAGGTCATGAGCCTCC
AAGTTACCAACCAGCTCAGCCATTTGCTTATAAGGGCCGGAGCCATTTGG
ATTTGATCCATCATGACATCCATTCTAGTTTATTTATAGTACTAGTTATT
TTATTTCAAAGTTTTATATTTCTGACGCCTCTGTTATTAGCTAGCTAGTT
TTACACCATGCATAATGGAGACGATTTCATGATAGCTTAATTTGTAAGTT
CATGTGGACTTTATTTTCTATCCATATTCATGTAACCTAGATAGCTCTTG
ATGAATATTATGTTATCTTCCATCAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
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